G108951


Basic Information

Item Value
gene id G108951
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6464756 ~ 6471975 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU123979
TATCAGGGTCATATTAGGGTCATATCATGGCCATATTCGAGCCATATCTGTGCCATATGAAGGCAATATTAGAGCCATATCAGGGCTATTtaacagtcatgttagagccatattagagccatattcaAGCCATATTCGAGCCATATCTGAGCATATTAACGCCATATCAGAGTCATATcagagtcatattagagccatattagagccatatcagagtcatattagagccatattagagccatattagagccatatcagagccatattagagccatattagagccatatcagagtcatattagagccatatcagaGTcatattagagccatattagagtcatattagagccatatcagaGTCAT

Function

NR:

description
variable charge X-linked protein 3B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123979 True 363 lncRNA 0.61 2 6464756 6471975

Neighbor

gene id symbol gene type direction distance location
trip13 LOC106590995 coding upstream 74968 6378373 ~ 6389788 (+)
cep72 LOC106573558 coding upstream 152157 6286558 ~ 6312599 (+)
ccdc12 ccd12 coding upstream 214714 6231369 ~ 6250042 (+)
LOC118937376 NA coding upstream 370816 6092079 ~ 6093940 (+)
setd2 LOC106593284 coding upstream 415255 6002992 ~ 6049501 (+)
zgc:158766 LOC106590969 coding downstream 73393 6545368 ~ 6629469 (+)
LOC118937387 NA coding downstream 147135 6619110 ~ 6621596 (+)
LOC110505995 LOC106573077 coding downstream 173241 6645216 ~ 6649794 (+)
ptdss1a LOC106595791 coding downstream 181227 6653202 ~ 6684816 (+)
LOC110505984 LOC106574154 coding downstream 213925 6685900 ~ 6688012 (+)
G108943 NA non-coding upstream 28751 6434037 ~ 6436005 (+)
G108911 NA non-coding upstream 78036 6386330 ~ 6386720 (+)
G108897 NA non-coding upstream 99967 6362904 ~ 6364789 (+)
G108888 NA non-coding upstream 120233 6334097 ~ 6344523 (+)
G108887 NA non-coding upstream 131497 6332029 ~ 6333259 (+)
G108991 NA non-coding downstream 84066 6556041 ~ 6623583 (+)
G108994 NA non-coding downstream 86920 6558895 ~ 6559507 (+)
G109003 NA non-coding downstream 99643 6571618 ~ 6572130 (+)
G109011 NA non-coding downstream 116189 6588164 ~ 6588628 (+)
G109015 NA non-coding downstream 126948 6598923 ~ 6600166 (+)
G108874 LOC106573552 other upstream 178816 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 265415 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 406421 6056996 ~ 6058335 (+)
LOC110505679 LOC106579367 other upstream 462562 5976200 ~ 6002265 (+)
LOC110505637 LOC106573538 other upstream 505943 5953886 ~ 5958813 (+)
G109020 NA other downstream 161103 6633078 ~ 6633913 (+)
rbm24b LOC106596654 other downstream 384111 6855864 ~ 6868976 (+)
malsu1 malsu1 other downstream 436572 6908511 ~ 6911256 (+)
LOC110535156 LOC106606167 other downstream 469541 6941465 ~ 6944043 (+)
G109821 NA other downstream 663272 7135247 ~ 7140979 (+)

Expression


Co-expression Network