XLOC_020857


Basic Information

Item Value
gene id XLOC_020857
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 7612004 ~ 7622403 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042327
GAGCGCGCGCCACCGGTGGCTGATCTCGCTTCTCCGTGGCGTTTTGACACAAAAATACGCGTCCAAATTTAGGGGGGCCAGAGGGGGGGCCATGCTTGTTAACACCCTCCTCCACCCCCCATCCCCCCACCCCCCGGACCGCCACTGTTACGGAGCAAAAATCAAATGAGAAAACAACAGAACTTGAAATGGGGACGAAAGCCAAACCATGACTCCATAGGGACTAGAAGGACTTTCCAAAGGTGACACCATGTGTCTGGAGGATTGCAGCAGTACCTGGTCTAAAAGAGACACAGTGCTGGAGGAGTAGAACCCCAGATCTAACACCATCAGGAGGGAGGATGGTCAAATCTTGAGGAGAAAGCGGAGGAGTTTGTACTCAGGGATCTACAaaaacacctgaaacacttccagTTTTAGATGGGAATGAACCAGCTGAAGACATGAATTCACCTGTGagAAAACATGGATGCAGAACATGTCTAATTTATGGGTACTCAAGATTAATATGAGATTGGTCAAAGTGAGCTTACATTACATTTAagaaaggtaccaaaCCAGAGTGGAACTTTGTGGTgcccaaacaaaacacaaaaatgtattGCTGACGTGCCGGTTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042327 True 620 lncRNA 0.48 3 7612004 7622403

Neighbor

gene id symbol gene type direction distance location
XLOC_020856 BX511034.1 coding downstream 48411 7542472 ~ 7563593 (-)
XLOC_020855 BX511034.5 coding downstream 72590 7522728 ~ 7539414 (-)
XLOC_020854 BX511034.6 coding downstream 150401 7460029 ~ 7461603 (-)
XLOC_020853 BX511034.2 coding downstream 154757 7445017 ~ 7457247 (-)
XLOC_020852 BX511034.4 coding downstream 169542 7439255 ~ 7442462 (-)
XLOC_020859 BX511034.7 coding upstream 2196 7624599 ~ 7642967 (-)
XLOC_020860 NA coding upstream 26616 7649019 ~ 7651852 (-)
XLOC_020861 AL929276.2 coding upstream 46031 7668434 ~ 7669624 (-)
XLOC_020862 si:ch211-59h6.1 coding upstream 52985 7675388 ~ 7702958 (-)
XLOC_020863 si:ch73-44m9.3 coding upstream 136059 7758462 ~ 7809981 (-)
XLOC_020851 NA non-coding downstream 188536 7422884 ~ 7423468 (-)
XLOC_020838 FO904898.6 non-coding downstream 793476 6809366 ~ 6818528 (-)
XLOC_020835 NA non-coding downstream 858978 6727540 ~ 6753026 (-)
XLOC_020834 NA non-coding downstream 900488 6696517 ~ 6711516 (-)
XLOC_020866 NA non-coding upstream 502525 8124928 ~ 8126055 (-)
XLOC_020867 NA non-coding upstream 518208 8140611 ~ 8153399 (-)
XLOC_020870 NA non-coding upstream 662531 8284934 ~ 8292299 (-)
XLOC_020873 CABZ01061495.2 non-coding upstream 723672 8346075 ~ 8346200 (-)
XLOC_020850 BX511034.8 coding downstream 151105 7421631 ~ 7460899 (-)

Expression


Co-expression Network