G109069


Basic Information

Item Value
gene id G109069
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6869600 ~ 6870945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU124136
AGAAGAGAACAGCTTCCTATGGGGGTCAGATCAGATCCAGTGAGGGCAGGACAGAAGAGAACAGCTTCCTATGGGAGTCAGATCAGATCCAGTGAGGGCAGGACAGAAGAGAACAGCTTCCTATGGGAGTCAGATCAGATCCAGTGAGGGCAGGACAGAAGAGAACAGCTACTGGCCCAAAGCTGAAGCTTTTCCTGTCTATAGaagctgctcctctctctatgttcaTTGTTGGAGCAccatctaccacacacacacacacacacacacacacacacacacacacacacacacacagcggaatGTGGACTTTTTATATTCTAGAATGTTTTTCCTAATGTGCCTTAAAATATtggtatttggaaagtatttacGTAGCTTTTAATGAGAAAAGACAGATTTGCACCCTTTAGTTAGTCAGGGAGTAGGACTGTATTGAATAAATAATGTATTCATGTTATATTAGAGGTATGTTCTCCTGAGCTGTTCACATTGTTATTGTCAGGTATGTACTACAGCTACAATGATAATTAGGACTTTTATAAAAAACTAGATATAACGGCATGAAGTAAACCTTTTCTTTATCTATACAACCTATTTTCTTGTTACTTTGTAGATATATTTCTCTTTCTAATTTGTTCGTACAACGAAGGAGAAATGTTACAGCGTAAACTATTAGATAGACATTATAATACTTTCTATCctaaaaaaaacactgtttttaaaatgttatttccaTAGCTGTGATTTTCTTATTAACTTTGTGAGATTGACTGTTTTACAATGTTGGGAACTTTTTATACTTGAACTGCTTCATACCAAGGAATGTGTTAACACACatgttatatataatatatggaATGTGTTAACACACATGTTATCTATAATATATCAATATGTTAACACATAtgttatatataatatatcaatATGTTAACACACatgttatatataatatatcaatatgttaacacatgttatatataatatatgcaaTATGTTAACACACTCTATATATTTTTAAGAAGAATACTTTGAATGTCTCTGGACATAAACTGTCCAGTCTCTCAGAGATTCCAGTACAATATTCTATTTATCTTGCCTTTTCAAATGTGTTGCTCTGCAAATACAATCATTCATTTAATTAGATTAAATAAACAGCCTTTTAGCTGCTTCTATTCGTATTGTAGTTTTTACATAAATACACAACTGACAGAAAGCAGTTCACTGTAGATCCACCGAGTCTCACCTGCTGGGGCACATCTTTCTGTCAAACACAA
>TU124138
AGAAGAGAACAGCTTCCTATGGGGGTCAGATCAGATCCAGTGAGGGCAGGACAGAAGAGAACAGCTTCCTATGGGAGTCAGATCAGATCCAGTGAGGGCAGGACAGAAGAGAACAGCTTCCTATGGGAGTCAGATCAGATCCAGTGAGGGCAGGACAGAAGAGAACAGCTACTGGCCCAAAGCTGAAGCTTTTCCTGTCTATAGaagctgctcctctctctatgttcaTTGTTGGAGCAccatctaccacacacacacacacacacacacacacacacacacacacacacacacacagcggaatGTGGACTTTTTATATTCTAGAATGTTTTTCCTAATGTGCCTTAAAATATtggtatttggaaagtatttacGTAGCTTTTAATGAGAAAAGACAGATTTGCACCCTTTAGTTAGTCAGGGAGTAGGACTGTATTGAATAAATAATGTATTCATGTTATATTAGAGGTATGTTCTCCTGAGCTGTTCACATTGTTATTGTCAGGTATGTACTACAGCTACAATGATAATTAGGACTTTTATAAAAAACTAGATATAACGGCATGAAGTAAACCTTTTCTTTATCTATACAACCTATTTTCTTGTTACTTTGTAGATATATTTCTCTTTCTAATTTGTTCGTACAACGAAGGAGAAATGTTACAGCGTAAACTATTAGATAGACATTATAATACTTTCTATCctaaaaaaaacactgtttttaaaatgttatttccaTAGCTGTGATTTTCTTATTAACTTTGTGAGATTGACTGTTTTACAATGTTGGGAACTTTTTATACTTGAACTGCTTCATACCAAGGAATGTGTTAACACACAtgttatatataatatatcaatATGTTAACACACAtgttatatataatatatcaatatgttaacacatgttatatataatatatcaatatgttaacacatgttatatataatatatgcaaTATGTTAACACACTCTATATATTTTTAAGAAGAATACTTTGAATGTCTCTGGACATAAACTGTCCAGTCTCTCAGAGATTCCAGTACAATATTCTATTTATCTTGCCTTTTCAAATGTGTTGCTCTGCAAATACAATCATTCATTTAATTAGATTAAATAAACAGCCTTTTAGCTGCTTCTATTCGTATTGTAGTTTTTACATAAATACACAACTGACAGAAAGCAGTTCACTGTAGATCCACCGAGTCTCACCTGCTGGGGCACATCTTTCTGTCAAACACAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU124136 False 1280 lncRNA 0.34 2 6869600 6870945
TU124138 True 1243 lncRNA 0.34 2 6869600 6870945

Neighbor

gene id symbol gene type direction distance location
rbm24b LOC106596654 coding upstream 3000 6855864 ~ 6868976 (+)
LOC110506079 NA coding upstream 27507 6841032 ~ 6842093 (+)
kif13a kif13a coding upstream 30136 6688891 ~ 6839464 (+)
LOC110505984 LOC106574154 coding upstream 181588 6685900 ~ 6688012 (+)
ptdss1a LOC106595791 coding upstream 184784 6653202 ~ 6684816 (+)
grinab grina coding downstream 5042 6875987 ~ 6889713 (+)
LOC118937417 LOC106592634 coding downstream 20503 6891448 ~ 6896287 (+)
smpd5 LOC106577403 coding downstream 26553 6897498 ~ 6908200 (+)
malsu1 malsu1 coding downstream 37566 6908511 ~ 6911256 (+)
stk31 LOC106595692 coding downstream 41144 6912089 ~ 6938750 (+)
G109085 NA non-coding upstream 5297 6864063 ~ 6864303 (+)
G109070 NA non-coding upstream 5697 6859672 ~ 6863903 (+)
G109080 NA non-coding upstream 24670 6843876 ~ 6844930 (+)
G109072 NA non-coding upstream 56184 6812794 ~ 6813416 (+)
G108934 NA non-coding upstream 76421 6792011 ~ 6793179 (+)
G109088 NA non-coding downstream 566 6871511 ~ 6871727 (+)
G109092 NA non-coding downstream 8329 6879274 ~ 6879556 (+)
G109738 NA non-coding downstream 25478 6896423 ~ 6896670 (+)
G109739 NA non-coding downstream 33025 6903970 ~ 6904855 (+)
G109748 NA non-coding downstream 57760 6928705 ~ 6929195 (+)
G109020 NA other upstream 235687 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 583660 6282071 ~ 6285940 (+)
G108805 LOC106594197 other upstream 670259 6151712 ~ 6199341 (+)
G108775 LOC106606109 other upstream 811265 6056996 ~ 6058335 (+)
LOC110535156 LOC106606167 other downstream 70571 6941465 ~ 6944043 (+)
G109821 NA other downstream 264302 7135247 ~ 7140979 (+)
pde11al LOC106573285 other downstream 432083 7282430 ~ 7304709 (+)
creb5b LOC106573409 other downstream 745014 7615910 ~ 7706660 (+)

Expression


Co-expression Network