G109764 (LOC106592104)


Basic Information

Item Value
gene id G109764
gene name LOC106592104
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 6997217 ~ 7090223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU125066
gaagcagacattgaatatccctttgagcattgtgaagttattaattacactttggatggtgtatcaatacacccagtcactacaaagatacaaggaaaccgctcctCCCTCTCTTACTCAGTCTCTCCTTACACTAAAGAGGCCAGGCCTTTCACAGTGATACTCATGACTATAGGAAGGTATCCAGGCTGGTCCTTCATCTCTGTCCTCAGtgtgtcctcctctctcttcagtgTAACTTCAGAGTGACCAAAGAGACGCTCTGTCCTCTGATACAGCTCCTCCTCAGTCAGAATAGCCAGACCTGCATCTCTCAGAGAGAGGGTCTCCCCACTCCCTGCTGCCACATGCTGCACCAGGATCTGCAGGGCCTGTAAGACTGGAGGACTGCAACAGGATCCCAACACAGAGAGACCTTCATCTGTCATTCCGTCCATGGCACTGACAATGAGGTGGACGGCACTGAGAAGTGAGGATCTGATCTCGTCCTCTTCCTTCCCAACACATTGGTCTACAAGATCCAGTATGGCCTGGACTGTTTCCCTCTCAGACTCTTCCAGATCACCCAGGTCAGGAGTCTCACCATCACACATCTGATCCAGctgtgatgagagagagtgagatattcATCCCTGctattaggtgtgtgtgtg

Function

NR:

description
non-syndromic hearing impairment protein 5 homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125066 True 653 lncRNA 0.49 5 6997217 7090223

Neighbor

gene id symbol gene type direction distance location
mpp6a LOC106594438 coding upstream 2502 6944265 ~ 6994715 (+)
LOC110535156 LOC106606167 coding upstream 53174 6941465 ~ 6944043 (+)
stk31 LOC106595692 coding upstream 58467 6912089 ~ 6938750 (+)
malsu1 malsu1 coding upstream 85961 6908511 ~ 6911256 (+)
smpd5 LOC106577403 coding upstream 89017 6897498 ~ 6908200 (+)
pde11al LOC106573285 coding downstream 192207 7282430 ~ 7304709 (+)
cbx3b LOC106573104 coding downstream 268682 7358905 ~ 7369148 (+)
snx10b LOC106593746 coding downstream 279120 7369343 ~ 7377095 (+)
tax1bp1b LOC106594183 coding downstream 405960 7496183 ~ 7531274 (+)
creb5b LOC106573409 coding downstream 525687 7615910 ~ 7706660 (+)
G109758 NA non-coding upstream 25142 6971786 ~ 6972075 (+)
G109757 NA non-coding upstream 27299 6969041 ~ 6969918 (+)
G109748 NA non-coding upstream 68022 6928705 ~ 6929195 (+)
G109739 NA non-coding upstream 92362 6903970 ~ 6904855 (+)
G109738 NA non-coding upstream 100547 6896423 ~ 6896670 (+)
G109797 NA non-coding downstream 2203 7092426 ~ 7117995 (+)
G109762 LOC106596760 non-coding downstream 13832 7104055 ~ 7105297 (+)
G109766 LOC106592104 non-coding downstream 26205 7116428 ~ 7129520 (+)
G109821 NA non-coding downstream 48176 7135247 ~ 7140979 (+)
G109823 NA non-coding downstream 50966 7141189 ~ 7141711 (+)
rbm24b LOC106596654 other upstream 128241 6855864 ~ 6868976 (+)
G109020 NA other upstream 363304 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 711277 6282071 ~ 6285940 (+)
G110644 NA other downstream 808373 7898596 ~ 7935137 (+)
G110674 NA other downstream 983143 8073366 ~ 8103920 (+)

Expression


Co-expression Network