G109766 (LOC106592104)


Basic Information

Item Value
gene id G109766
gene name LOC106592104
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7116428 ~ 7129520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU125068
actacatgttgaccagacattccattcagtagactacattacatgttgaccagacgttccattcagtagactacatgttgaccagacattccattcagtagactacattacatgttgaccagacgttccattcagtagactacatgttgaccagatgttccattcagtagactacatgttgaccagacattccattcagtacactacatgttgaccagacgttccattcagtagactacatgttgaccagacattccattcagtagactacattacatgttgaccagacgttccattcagtagactacatgttgaccagatgttccattcagtagactacatgttgaccagacattccattcagtacactacatgttgaccagacgttccattcagtagactacatgttgaccagacgttccattcagtagactacatgttgaccagacattccattcagtagactacattacatttTGACCggacgttccattcagtagactacatgttgaccagacattccattcagtagactacattacatgttgaccagatgttccattcagtagactacattacatgttgaccagacgttccattcagtagactacatgttgaccagatgttccattcagtagactacatgttgaccagacgttccattcagtacactacatgttgaccagacgttccattcagtagactacatgttgaccagacgttccattcagtagactacatgttgaccagacattccattcagtagactacatgttgaccagacattccattcagtagactacattacatgttgaccggacgttccattcagtagactacattacatgttgaccagatgttccattcagtagactacatgttgaccagacgttccattcagtacactacatgttgaccagacgttccattcagtagactacatgttgaccagacgttccattcagtagactacatgttgactagacattccattcagtagactacatgttgaccagacgttccattcagtacactacatgttgaccagacgttccattcagtagactacattacatgttgaccagatgttccattcagtagactacatgttgACCGCTAAACAGGAGACATTACCCTCCACTGGCATTATTACCTTTGTTCAGATTTAGGGGACTGTTGGTATCAAAGTCGCCTCCCAGGTCCATAAATCCATCTACTTCCAACCCCTCCTTTGACCTATCTATTTCAAAGCCCCCATTGTTGCAGATGAGGCACAGCTCATTGCATTTGACGTAGAGTTCAATCAGACTGTAGGCCATGACAGTATTTGCAGGAATACCCAGTGACACATCACTATCTGTCTGAGTACTGCCGCTGTGCTTCATAGAGGCCTTCCCGCTCAGGAACACACAGGCGCTCACGTTGGCTCCTACATTGCCATGCTTAAGGACATTGTTTGTGACCGGGCAAGGTAGTGACGTCATAATCCTCTCCGTCAAGACGCCTAACACTGCCCTGGGATTCGCACGGGTCTGCTTGATCACAGGATGGGACATGTCCAGAACTCTGCAGGAGGGACACATtttaggtcatatttcatagaaatctggaaacactggaaaGCTACTTTAAAAGTAAACaaatggatgtaccaatcacAGATTGTCCCTTTAAGCTAAACTAGTAGTGAAAACAGTGAGGAGGTAGTTTAAGTTTCAGGAAGTTGCTAAACCAGTACAGTTCCACTTCTTTCTTGTCTGAAATCACTTCAACCTGAAAATGTCCTTTTTACACAAAAGATACCTGCCTGATGTCATTGCAACCAGTTTTGCTCGCTGGTCTTGGGTCTTGGACTCCTTGGGAAGGTGAACTGTATGATGTATTATGACTGTATTGTGAC

Function

NR:

description
non-syndromic hearing impairment protein 5 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125068 True 1900 lncRNA 0.43 3 7116428 7129520

Neighbor

gene id symbol gene type direction distance location
LOC110535004 LOC106596209 coding upstream 37351 7067283 ~ 7079077 (+)
LOC110535127 LOC106592104 coding upstream 37453 7030625 ~ 7078975 (+)
mpp6a LOC106594438 coding upstream 121713 6944265 ~ 6994715 (+)
LOC110535156 LOC106606167 coding upstream 172385 6941465 ~ 6944043 (+)
stk31 LOC106595692 coding upstream 177678 6912089 ~ 6938750 (+)
pde11al LOC106573285 coding downstream 152910 7282430 ~ 7304709 (+)
cbx3b LOC106573104 coding downstream 229385 7358905 ~ 7369148 (+)
snx10b LOC106593746 coding downstream 239823 7369343 ~ 7377095 (+)
tax1bp1b LOC106594183 coding downstream 366663 7496183 ~ 7531274 (+)
creb5b LOC106573409 coding downstream 486390 7615910 ~ 7706660 (+)
G109761 NA non-coding upstream 8367 7089292 ~ 7108061 (+)
G109762 LOC106596760 non-coding upstream 11131 7104055 ~ 7105297 (+)
G109764 LOC106592104 non-coding upstream 26205 6997217 ~ 7090223 (+)
G109787 NA non-coding upstream 37030 7054449 ~ 7079398 (+)
G109793 NA non-coding upstream 44989 7070426 ~ 7071439 (+)
G109821 NA non-coding downstream 8879 7135247 ~ 7140979 (+)
G109823 NA non-coding downstream 11669 7141189 ~ 7141711 (+)
G109828 NA non-coding downstream 17181 7146701 ~ 7148101 (+)
G109834 NA non-coding downstream 24725 7154245 ~ 7155162 (+)
G109842 NA non-coding downstream 34471 7163991 ~ 7165357 (+)
malsu1 malsu1 other upstream 205223 6908511 ~ 6911256 (+)
rbm24b LOC106596654 other upstream 247452 6855864 ~ 6868976 (+)
G109020 NA other upstream 482515 6633078 ~ 6633913 (+)
G108874 LOC106573552 other upstream 830488 6282071 ~ 6285940 (+)
G110644 NA other downstream 769076 7898596 ~ 7935137 (+)
G110674 NA other downstream 943846 8073366 ~ 8103920 (+)

Expression


Co-expression Network