G109828


Basic Information

Item Value
gene id G109828
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7146701 ~ 7148101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU125142
gacaaggggtctgaactGTATCTACTAGTAGAAATCAAGATATAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACAGACACAAGGGGTCTTCACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACAGACACAAGGGGTCTTCACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGAGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACACAAGGGGTCTGAACTGTATGTACTGGTAGAAATCAAGATAAAGAGATCATTTAAAAATCAACTGTACGGATAAGAAAAGTATGAATACTACCAACCGATGGGC
>TU125144
gacaaggggtctgaactGTATCTACTAGTAGAAATCAAGATATAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACAGACACAAGGGGTCTTCACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACAGACACAAGGGGTCTTCACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTGGTAGAAATCAAGATAAAGACACAAGGGGTCTGAACTGTATCTACTAGTAGAAATCAAGATATAGACACAAGGGGTCTGAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125142 False 711 lncRNA 0.37 2 7146701 7148101
TU125144 True 532 lncRNA 0.41 2 7146701 7147554

Neighbor

gene id symbol gene type direction distance location
LOC110535004 LOC106596209 coding upstream 67624 7067283 ~ 7079077 (+)
LOC110535127 LOC106592104 coding upstream 67726 7030625 ~ 7078975 (+)
mpp6a LOC106594438 coding upstream 151986 6944265 ~ 6994715 (+)
LOC110535156 LOC106606167 coding upstream 202658 6941465 ~ 6944043 (+)
stk31 LOC106595692 coding upstream 207951 6912089 ~ 6938750 (+)
pde11al LOC106573285 coding downstream 134329 7282430 ~ 7304709 (+)
cbx3b LOC106573104 coding downstream 210804 7358905 ~ 7369148 (+)
snx10b LOC106593746 coding downstream 221242 7369343 ~ 7377095 (+)
tax1bp1b LOC106594183 coding downstream 348082 7496183 ~ 7531274 (+)
creb5b LOC106573409 coding downstream 467809 7615910 ~ 7706660 (+)
G109823 NA non-coding upstream 4990 7141189 ~ 7141711 (+)
G109821 NA non-coding upstream 5722 7135247 ~ 7140979 (+)
G109766 LOC106592104 non-coding upstream 17181 7116428 ~ 7129520 (+)
G109797 NA non-coding upstream 28706 7092426 ~ 7117995 (+)
G109761 NA non-coding upstream 38640 7089292 ~ 7108061 (+)
G109834 NA non-coding downstream 6144 7154245 ~ 7155162 (+)
G109842 NA non-coding downstream 15890 7163991 ~ 7165357 (+)
G109763 NA non-coding downstream 34052 7182153 ~ 7184712 (+)
G109853 LOC106598887 non-coding downstream 39913 7188014 ~ 7188389 (+)
G109854 NA non-coding downstream 41537 7189638 ~ 7189854 (+)
malsu1 malsu1 other upstream 235496 6908511 ~ 6911256 (+)
rbm24b LOC106596654 other upstream 277725 6855864 ~ 6868976 (+)
G109020 NA other upstream 512788 6633078 ~ 6633913 (+)
G110644 NA other downstream 750495 7898596 ~ 7935137 (+)
G110674 NA other downstream 925265 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1888703 8820359 ~ 9072449 (+)

Expression


Co-expression Network