XLOC_020862 (si:ch211-59h6.1)


Basic Information

Item Value
gene id XLOC_020862
gene name si:ch211-59h6.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 7675388 ~ 7702958 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041077
GTGTATTCGGTGCTGATGCTGAGATGAAGGCAGTATCAGTGATGGAGGGAGATTCTGTCACTTTAAACCCTGATCAGGAATTACAGGGGATTGTTCTGCTACTTTGGAAGTTTGGAGACAACGGTTCCACCATTGCTCACATCAGTGGAAATAAGACCTCATATCCTACTAAGCAGAAGATATTTACAGACAGACTGATGCTGAAAGAGACTGGATCTCTTACCATCAACAACATGAGACACAATCACTCTGGACGTTATAAACTAGAGGTAGACCACAGTGGAGGGAGATTAGAATCAAGCTTCTTTGTTACTGTAGATGAGCCTCCACTTGTTTTTGAAGCTTATCAAGCTGAAAGAAAAAGCTTGACAGTGACAGAGGGATATCCAGTCATTCTTCACACTGGTATTACTAAACTACACGGAGATGAGCTGATAGTGTGGAGGTTTGGTGTTGAAGGAAAACTCCTGGCTAAAGAAGATAAAGAGATCAAGAGTCCACCATATTATGATACTGATGAGAGATTCAAAGGCAGACTAAAGCTAAATGAccagactggatctctgaccatcaacaacatgaaagacaCAGATGCTGGACTTTATACAGTGAagatcaacaacaacaaactgaCAACATACAGAGATTTCACTGTTACTGTCAGTGGTGAGTAATGTCATGGTCTGTAAATAACTCAGATGATCTGATGTAAAATTTTATCATGAGGAATCAactgttctttttttatataaataaatgcaatgttgTGGATCAGCGTGTTCATAATGTCTGTCTTTATCTTTACAGGTTCAGGTCTGACTTCAGCTGCTGTAGCAGGAATTATTATTGGTCTGCTGATGCTGTTTGCTGTTGTAGCTGGATCGGGTTTTCTTTACCATCGCCGCATGATTGCTGAACAACAGAAACACATGGtaaaaaaaatacatacagcagagagagaaaatgtgactttaaagactaaaactaaactacTTGAAGGTGATGAGATCCAGTGGTGGTTTAGCAATGAAAACTTCCTAATAGCTGAAATAATTGAAGGGATTGGAGAGACATATGATGGTCTTGATGGGAGATTCAGTGACATCCTGGAGCTGGACAAGAAGACTGGGTCTCTGAACATCAAGAACATCAGACGTAAACACACTGGTGATTATAGGTTAAAGATAATCAAGCGGAGCAGAGAAACCTCAAATTTTAATTTCAGTGTTTATATTAAAGAGGAGAAAATGATAGTGAGTTGTGGAGAATCTGTCACTCTTAAGGCTGATGCTGAAATACAGAGAGAGGATGAGGTACAGTGGCTGTTTCATATTGAAAATGATCTGATTGCTAAAATGACCGGCAACACCAGAGAGATAACATATCCTGATGAGAGATTCAGAGACACACTGAAGATGGACGAgaagactggatctctgaccatcaatAACATTGGAGATGAACATactggactttataaagtgaagGTCATCAGCAGAGGAGAAGCCACGTACAAGACATTCACTGTTTACATTAACGCTCTCATAAATGAAAAGTTCATTTTTGACGGAAGGATAGGAGAATCTGTCACACTAAAACCTTATATTAAAATACAGAGAAATAATGAAATACAGTGGATGATTGGAGATCAAGACTGTCTAATTGCTAAAATGACCAGAGGAGCTAGAAAGATAACATACCACGAGAGATTTAGAGACAGACTAATGCTGAATGAgaagactggatctctgaccatcaacaacatcactattgaagacaacagagATTATAAACTGAAGATCATCAGCAGCAGTGGAACCACTGTAAAGAAATTCAGTGTTTTTATCAAAGGGGAGCCAAGTTTTTTCTGTGTGGGACATACAGCTGTTCTACAGTGTGCTGCAGAGATACAGACTGATGAGATCGAATGGAGGTTTAAAGGTGAGGAGTCTCCCATAGCTGAAGTGAAAGGTGGACAGATCGTTCCATATAATGGTCCTAATAggagattcagagacagactggAGGTTGATAAAAGTAATGGATCACTGATCATCAAGAACATCAGACGTGAGCATGAGGGGCTTTATAAGCTAAAGAGAAAGAGTTCCGGCACAGGAGACCGTGTCAATGCATTCACTGTTACGCTCTGTGATTCCATTATTGTCGGATGGGTAGGAAAATCTGTCACACTAAAGTCTGATACTGAAATACAGAGAAACTATGAAATACTGTGGCTGATTGAAGACAGTCTAATTGCTAAATTGACCAGAGAAGCTAGAGAGATAACATATTACAGATTCAGAGACAGACTAGTGCTGGACGAggagactggatctctgaccatcaacaaCATCACTGTTGAAGACAACAGAGATTATAAACTGAGGATCATCAGCAGCAGTGGAACCACTGTAAAGAAATTTGGTGTTCTTACCAAAGGGGAGCCAATGTCATTCAATGAGGGAGATACAGCTGTTCTACAGTGTGCTGCAGAGATACAGACTGATGAGATTGAATGGAGGTTTAAAAGTGAGGAGTCTCCCATAGCTGAAGTGAAAGGTGGAAAGATCATTCTATATAATGGTCCTGATAGGAGATTCAGAGACGGACTGGAGGTTGATAAAAAGACTGGATCACTGATCATCAGTAACATCAGATGTGAGCATAAGGGCCTTTATCAACTAATGAAAAAGAGTTCCAGCACAGGAGACCATATCAGTGCATTCGATGTTATGGTCTATGGTTCCACAGGAAACCAAGTGAAGGACTCAGTGACTGAAAAATCACCATTGTTGTATGAAGATGATCAGAATGTCGTGTATGAGAATGAGAGGATGAGTTCACTTTAATGAGAGAAGACACGCCCACCAATGCCAATCACTGTGACATCATCAACATTTAAAGGTGACATATAGTGCATTGTTTCAGTTAGttgaattattttgtattatctaCAGGTAACAGTCTGTGTTTTGGCTGACAAACTTCTGGTGACTTAAAAACTTCAAACTGATTAAGAACTTTACCTAAAGTACATGCAAATGTTGAGAGCATGCTAACTAATAGTCCCGTGTGCAACTTAACAGTCTAATAGATTTTCAAGAGAACGAGGAAACAAGGAGGTTTGAGGCTCATGAGGTATGGCTGTTTCCATGTGCGCAGCAATTATTATTCAGTTATTCCTAGGTATaaccagattttcattatatagcacttttaaagCTCCAGCTACAACCACAAATCATGTTTCTGCTTTTCTGAGCTTCTAGAATCCGTCCAGTGAATGTAGGAAACAAAAGTGTGTTTGATCAGCGTTAAACTCTTGCGTGCacgtatgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaaaagatTCTGTGTTTAGATGAAGATGGAAGTGTGTTGCTAAAACACTTGATATCATTTTATAAATGTTACTCATCATATCTGTTATTCTGTTAGTAGTTTAATTCTCAGAGCTTTGATTGAGTGTGATTGTAGACAGCGATCAGCTTTTATCATATGTTTTACCACAGCAGTGTTTCTCTAATCATTGCGTTagatgtgttttaattttaataattaacacCAATATCAGGATAATGGCACTGTTTTTGGGTCTCGGGTATGAAACCCACATTTCAGAAACATCTTGACCATCAGTGCCAGACCTCTATTCAGTCTATTATTGTTACACGTTTATTGAAGAAGTTAATCAGCTGTAACtcttatttacagtattttacttttcatttaaactttatacttttcattatttactattattgagTCTATTATTTCACTCTCattttattatgctttaaaatgttGTTCTGAAGTGAATCTTCCTTATGTAAATCTGATCTGCGTGTCAAATTTAGTATATAAAGGACTTTGTATTTATGTTGAAGCACTTAAATTAGCCTTTAACTAAAGCTCTTGTTCAACTCGAGCACTTCCTGAAGTGACGTCGCACTGTTGTGAAATTGCCTTTGATTTATTGATGAATCTGTTGGTCATTTTTGACGACTGCATGTTCATAATGAATACATGTCAAATACTTACTGAAACTTTCTGTCCTCAAGTTTAGTGGACGAATATTGTTTCTAGTTTTGCTTTCTAACAactgttttaaaacacaaaacactTGAAAATGTATTCAATTGGTATTCGAgccaaaaataataaagaaaatttgtGTGAAATTTGTGTTGGAttgtattcatttagtttttctacAATTTGTTTTCTACAACATGTTTTTTAGAGTAGAGTGAATCTGGGAAATGGGCATGAAGGGAAAAAGCTGCATAAACTTGAATAATATTGCGTAGTCCTATTCAAAATAATCCAAACTAATTTGAAGATGACATGAGACTACATCATTGGTAGTTCAATTATTCACTGAGTTTTGTTGTGAAATTGAACTAAATTATAATATGTTAATGATCAGTTGTGTTTCAATGATAAATCTTAAGACTCACTGCATTTATCTCCTGCCAAGAAAAGGTAAAggtaaaagaaaaatgtaaatgtagaaataaatgaataaatctataGATGAAACAGTGGacataaatctaaaaataaataaaagaaaaaataaatgctgggaaaaaataatagatataaatgtcaaaaatattgtttcttttttacatttatttatttacttatttttataatagttaaaaaactaataatttattttatatcccACGTTGGCAGACACATATCTGGCTCATAAAATGaacataacattcattcattcattcatttattttattttcggcttagtccctttattaatccggggtcgccacagcggaatgaactgtgtatccagcacgtttttacgcagccgattcccttccagccgcaacccatctctggaaaatatccgcacacactcgttcacacttacacactatggacaatttagcttacccaattcacctgtaccgcatgtctttggactgtgggggaaaccagagcacccggaggaaacccacacaaacgcagggagaacatgcaaactccacacagaaacgccaactgacccagccgaagctcgaaccagtgaccttcttgctgtgagg
>TCONS_00041078
atgtgactttaaagactaaaactaaactacTTGAAGGTGATGAGATCCAGTGGTGGTTTAGCAATGAAAACTTCCTAATAGCTGAAATAATTGAAGGGATTGGAGAGACATATGATGGTCTTGATGGGAGATTCAGTGACATCCTGGAGCTGGACAAGAAGACTGGGTCTCTGAACATCAAGAACATCAGACGTAAACACACTGGTGATTATAGGTTAAAGATAATCAAGCGGAGCAGAGAAACCTCAAATTTTAATTTCAGTGTTTATATTAAAGAGGAGAAAATGATAGTGAGTTGTGGAGAATCTGTCACTCTTAAGGCTGATGCTGAAATACAGAGAGAGGATGAGGTACAGTGGCTGTTTCATATTGAAAATGATCTGATTGCTAAAATGACCGGCAACACCAGAGAGATAACATATCCTGATGAGAGATTCAGAGACACACTGAAGATGGACGAgaagactggatctctgaccatcaatAACATTGGAGATGAACATactggactttataaagtgaagGTCATCAGCAGAGGAGAAGCCACGTACAAGACATTCACTGTTTACATTAACGCTCTCATAAATGAAAAGTTCATTTTTGACGGAAGGATAGGAGAATCTGTCACACTAAAACCTTATATTAAAATACAGAGAAATAATGAAATACAGTGGATGATTGGAGATCAAGACTGTCTAATTGCTAAAATGACCAGAGGAGCTAGAAAGATAACATACCACGAGAGATTTAGAGACAGACTAATGCTGAATGAgaagactggatctctgaccatcaacaacatcactattgaagacaacagagATTATAAACTGAAGATCATCAGCAGCAGTGGAACCACTGTAAAGAAATTCAGTGTTTTTATCAAAGGTGAGTCATTTGT

Function

symbol description
si:ch211-59h6.1 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000013022

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041077 False 5128 mRNA 0.37 9 7675388 7702958
TCONS_00041078 True 901 mRNA 0.38 3 7694439 7700179

Neighbor

gene id symbol gene type direction distance location
XLOC_020861 AL929276.2 coding downstream 5764 7668434 ~ 7669624 (-)
XLOC_020860 NA coding downstream 23536 7649019 ~ 7651852 (-)
XLOC_020859 BX511034.7 coding downstream 32421 7624599 ~ 7642967 (-)
XLOC_020857 NA coding downstream 52985 7612004 ~ 7622403 (-)
XLOC_020858 BX511034.3 coding downstream 57397 7614672 ~ 7617991 (-)
XLOC_020863 si:ch73-44m9.3 coding upstream 55504 7758462 ~ 7809981 (-)
XLOC_020864 sc:d217 coding upstream 193114 7896072 ~ 8006342 (-)
XLOC_020865 CABZ01034698.2 coding upstream 268143 7971101 ~ 8074212 (-)
XLOC_020866 NA coding upstream 421970 8124928 ~ 8126055 (-)
XLOC_020867 NA coding upstream 437653 8140611 ~ 8153399 (-)
XLOC_020852 BX511034.4 non-coding downstream 232926 7439255 ~ 7442462 (-)
XLOC_020851 NA non-coding downstream 251920 7422884 ~ 7423468 (-)
XLOC_020870 NA non-coding upstream 581976 8284934 ~ 8292299 (-)
XLOC_020873 CABZ01061495.2 non-coding upstream 643117 8346075 ~ 8346200 (-)
XLOC_020875 NA non-coding upstream 702203 8405161 ~ 8409081 (-)

Expression


Co-expression Network