G109853 (LOC106598887)


Basic Information

Item Value
gene id G109853
gene name LOC106598887
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7188014 ~ 7188389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU125171
CGTCAATACAGCCGTGTAACTTCCCCTTCTCAATCTGAAAGACAGAAACATTAATAACCATGTCAATACAGCCGTGTAACTTCTCAATCTGAAAGACAGGAACATTAATAACCATGTCAATACAGCCGTGTAACTTCTCAATCTGAAAGACAGGAACATTAATAACCACGTCAATACAGCCATGTAACTTCCCCTTCTCAATCTGAAAGACAGGAACATTTATAACCACGTCAACACAGCCATGTAACTTCTCAATCTGAAAGACAGGAACATTAAGAAGGTCTGAGTAATGGCTGACCGTGTAGAAGCATTATTGCTGAAAGAGACAgaagtctgcatcccaaatggcaccgtattccatATATCaaggctgccc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106598887, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125171 True 376 lncRNA 0.41 1 7188014 7188389

Neighbor

gene id symbol gene type direction distance location
LOC110535004 LOC106596209 coding upstream 108937 7067283 ~ 7079077 (+)
LOC110535127 LOC106592104 coding upstream 109039 7030625 ~ 7078975 (+)
mpp6a LOC106594438 coding upstream 193299 6944265 ~ 6994715 (+)
LOC110535156 LOC106606167 coding upstream 243971 6941465 ~ 6944043 (+)
stk31 LOC106595692 coding upstream 249264 6912089 ~ 6938750 (+)
pde11al LOC106573285 coding downstream 94041 7282430 ~ 7304709 (+)
cbx3b LOC106573104 coding downstream 170516 7358905 ~ 7369148 (+)
snx10b LOC106593746 coding downstream 180954 7369343 ~ 7377095 (+)
tax1bp1b LOC106594183 coding downstream 307794 7496183 ~ 7531274 (+)
creb5b LOC106573409 coding downstream 427521 7615910 ~ 7706660 (+)
G109763 NA non-coding upstream 3302 7182153 ~ 7184712 (+)
G109842 NA non-coding upstream 22657 7163991 ~ 7165357 (+)
G109834 NA non-coding upstream 32852 7154245 ~ 7155162 (+)
G109828 NA non-coding upstream 39913 7146701 ~ 7148101 (+)
G109823 NA non-coding upstream 46303 7141189 ~ 7141711 (+)
G109854 NA non-coding downstream 1249 7189638 ~ 7189854 (+)
G109857 NA non-coding downstream 6204 7194593 ~ 7195075 (+)
G109867 NA non-coding downstream 18471 7206860 ~ 7208949 (+)
G109885 NA non-coding downstream 38258 7226647 ~ 7227034 (+)
G109901 NA non-coding downstream 65385 7253774 ~ 7254702 (+)
G109821 NA other upstream 47035 7135247 ~ 7140979 (+)
malsu1 malsu1 other upstream 276809 6908511 ~ 6911256 (+)
rbm24b LOC106596654 other upstream 319038 6855864 ~ 6868976 (+)
G109020 NA other upstream 554101 6633078 ~ 6633913 (+)
G110644 NA other downstream 710207 7898596 ~ 7935137 (+)
G110674 NA other downstream 884977 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1848415 8820359 ~ 9072449 (+)

Expression


Co-expression Network