G109905 (LOC106574028)


Basic Information

Item Value
gene id G109905
gene name LOC106574028
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7262188 ~ 7263982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU125242
ATTCTGTATCTGGATTCTGTATCTGGCTCTGTATCTGGATTCTGTATCTGGCTCTGTATCTGTATCTGGATTCTGTATCTGGCTACATGCACATCAGTATATTGTCTGAGGTGGACTCCTTGGTCCACTTGTATTATTAGTCATCTGTAGACTTCTTTATGCTTTTGTAACGGACCATAAATGTGTCCCTTTCATGTGTTCATCAGTCATTCCATCTGTCATTGTGTCATGTATAGTGCCGCATATATACACTCAAAGCATGTACACTACTTCTGGATGATTTTATTAGAACCATCTGCACATGGAAAGATAGACATCTTAAGACAGACATGATAAGATAGACATCATAAGACAGACATGATAAGACAGACATGATAAGACAGACATCATAAGACAGACATGATAAGATAGACATGTCAGTAGCTTTGAGTAAGCAACAGTATATGGTTGGATTTCCCATCATGAAGAGATAACGTTGTAGACCGTAGACCCATTCAACTCACTAAGCCCTCTGATGTCTTCCACTCCCTACAGACTGTGGGCATAGTGGTAGGTCTACAATACAGTGCTCAGTTGTGgaaatagaaggagttgaatccGTAGAAGCGGTGCTTTCTCCCGGTGTGTACATTGTCCTGCAGATTGACCGCGCCCCCCTGGAGGGAGCTGTGGAAGAGACGGTGGACCTCTGACTTACTGAAGGAGTCCTGGAGCTCCAACAGGGCCAGCTGGCACCGGCCCCTCTCCCCTGGGTGGGTGGAAGGCAGGGCATGTGGACGGGGTTGGATACAGGGGTTGGAGATACTGCGTGGGATGGGGATCTCTCTGTTCTGCCACTCCCGATCCTGTTCTTCTAGGGTCTGATTGACAGTCATCTCAGAACCCAGAACTAAATTCCCGCCTGAACGCCAGTTACGGATGTTGGGAGAGACCAGATCAGCAGCAGACAGCTCTGTCTCAGATTCATATGCCGCCCCTGTGTTGTTAGTAGCCAACGGTGGAGCTGGCTGGCTCAGGCTGAACAGGTTACCCCCTGATGCTGTGTAGCTCTGCTTCTTGCTGCTAGGAACATCCTCGTACCATACCTCTCTCTGGGTGTTATTCTCTTTGGTGACCTCTGTGGTCTCATTCAGGGGAGAATGGGGCAGCTGGCAGCTGTACAAGGCCAGAgagctctctgtgtctgtgaccttctCCAGGGAGGCTCTGGGAGCCTGGCTGCTCTGCTGGGGGTCTGATGCCCCTGGCCCTGGGTGATGGAGCCCTTCTCTGACCTCCTTAACCTGGCACTCACACCTCTCCTCCCCACACCTCTCACAACTGGAGCCT
>TU125241
TATCTGTATGTATCTGGATTCTGTATCTGGCTACATGCACATCAGTATATTGTCTGAGGTGGACTCCTTGGTCCACTTGTATTATTAGTCATCTGTAGACTTCTTTATGCTTTTGTAACGGACCATAAATGTGTCCCTTTCATGTGTTCATCAGTCATTCCATCTGTCATTGTGTCATGTATAGTGCCGCATATATACACTCAAAGCATGTACACTACTTCTGGATGATTTTATTAGAACCATCTGCACATGGAAAGATAGACATCTTAAGACAGACATGATAAGATAGACATGATAAGACAGACATCATAAGATAGACATCATAAGCAAAACATGTCAGTAGCTTTGAGTAAGCAACAGTATATGGTTGGATTTCCCATCATGAAGAGATAACGTTGTAGACCGTAGACCCATTCAACTCACTAAGCCCTCTGATGTCTTCCACTCCCTACAGACTGTGGGCATAGTGGTAGGTCTACAATACAGTGCTCAGTTGTGgaaatagaaggagttgaatccGTAGAAGCGGTGCTTTCTCCCGGTGTGTACATTGTCCTGCAGATTGACCGCGCCCCCCTGGAGGGAGCTGTGGAAGAGACGGTGGACCTCTGACTTACTGAAGGAGTCCTGGAGCTCCAACAGGGCCAGCTGGCACCGGCCCCTCTCCCCTGGGTGGGTGGAAGGCAGGGCATGTGGACGGGGTTGGATACAGGGGTTGGAGATACTGCGTGGGATGGGGATCTCTCTGTTCTGCCACTCCCGATCCTGTTCTTCTAGGGTCTGATTGACAGTCATCTCAGAACCCAGAACTAAATTCCCGCCTGAACGCCAGTTACGGATGTTGGGAGAGACCAGATCAGCAGCAGACAGCTCTGTCTCAGATTCATATGCCGCCCCTGTGTTGTTAGTAGCCAACGGTGGAGCTGGCTGGCTCAGGCTGAACAGGTTACCCCCTGATGCTGTGTAGCTCTGCTTCTTGCTGCTAGGAACATCCTCGTACCATACCTCTCTCTGGGTGTTATTCTCTTTGGTGACCTCTGTGGTCTCATTCAGGGGAGAATGGGGCAGCTGGCAGCTGTACAAGGCCAGAgagctctctgtgtctgtgaccttctCCAGGGAGGCTCTGGGAGCCTGGCTGCTCTGCTGGGGGTCTGATGCCCCTGGCCCTGGGTGATGGAGCCCTTCTCTGACCTCCTTAACCTGGCACTCACACCTCTCCTCCCCACACCTCTCACAACTGGAGCCT

Function

NR:

description
uncharacterized protein C7orf31 homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125242 False 1329 lncRNA 0.50 3 7262188 7263982
TU125241 True 1249 lncRNA 0.50 2 7262468 7263982

Neighbor

gene id symbol gene type direction distance location
LOC110535004 LOC106596209 coding upstream 183111 7067283 ~ 7079077 (+)
LOC110535127 LOC106592104 coding upstream 183213 7030625 ~ 7078975 (+)
mpp6a LOC106594438 coding upstream 267473 6944265 ~ 6994715 (+)
LOC110535156 LOC106606167 coding upstream 318145 6941465 ~ 6944043 (+)
stk31 LOC106595692 coding upstream 323438 6912089 ~ 6938750 (+)
pde11al LOC106573285 coding downstream 18448 7282430 ~ 7304709 (+)
cbx3b LOC106573104 coding downstream 94923 7358905 ~ 7369148 (+)
snx10b LOC106593746 coding downstream 105361 7369343 ~ 7377095 (+)
tax1bp1b LOC106594183 coding downstream 232201 7496183 ~ 7531274 (+)
creb5b LOC106573409 coding downstream 351928 7615910 ~ 7706660 (+)
G109901 NA non-coding upstream 7486 7253774 ~ 7254702 (+)
G109885 NA non-coding upstream 35154 7226647 ~ 7227034 (+)
G109867 NA non-coding upstream 53239 7206860 ~ 7208949 (+)
G109857 NA non-coding upstream 67113 7194593 ~ 7195075 (+)
G109854 NA non-coding upstream 72334 7189638 ~ 7189854 (+)
G109907 NA non-coding downstream 1412 7265394 ~ 7265722 (+)
G109908 NA non-coding downstream 1746 7265728 ~ 7265934 (+)
G109909 NA non-coding downstream 2053 7266035 ~ 7266451 (+)
G109917 NA non-coding downstream 29058 7293040 ~ 7293383 (+)
G110139 NA non-coding downstream 47647 7311629 ~ 7311995 (+)
G109821 NA other upstream 121209 7135247 ~ 7140979 (+)
malsu1 malsu1 other upstream 350983 6908511 ~ 6911256 (+)
rbm24b LOC106596654 other upstream 393212 6855864 ~ 6868976 (+)
G109020 NA other upstream 628275 6633078 ~ 6633913 (+)
G110644 NA other downstream 634614 7898596 ~ 7935137 (+)
G110674 NA other downstream 809384 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1772822 8820359 ~ 9072449 (+)

Expression


Co-expression Network