G110225


Basic Information

Item Value
gene id G110225
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7428130 ~ 7428618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU125637
tccaccgccatcactttgtttcagcatgataacgcacGGCCCCATTTCGCacggatctgtacacaattcctggaagctgaaagtgTCCCAGTTATTCtatggcctgcatattcaccagacacATCACCCATTTTGAAAatgtttgtgatgctctggatcactgtgtatgacagcgtgttccagatcctgccaacatccagcaacttcgcactgccatttgaagaggagtgggacaacattccacaggccacaatcaacagcctgaacaactctatgcgaaggagatgtcgccCTGCATGAGGCATATGCTGGTGTAACAGTACtcttcttgcgttgtgtacaatcagtcatcgacacggaactccaacatgtagcaccagtcacGTAGATTTATtctgataagaacgacacaaaattgcacgtcatgcaatgcacgtatcaccatccaactctgcactcacgcactgtacaaaatCTATGAaccccccc

Function

NR:

description
Transposable element Tcb1 transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125637 True 489 lncRNA 0.47 1 7428130 7428618

Neighbor

gene id symbol gene type direction distance location
snx10b LOC106593746 coding upstream 51035 7369343 ~ 7377095 (+)
cbx3b LOC106573104 coding upstream 58982 7358905 ~ 7369148 (+)
pde11al LOC106573285 coding upstream 123421 7282430 ~ 7304709 (+)
LOC110535004 LOC106596209 coding upstream 349053 7067283 ~ 7079077 (+)
LOC110535127 LOC106592104 coding upstream 349155 7030625 ~ 7078975 (+)
tax1bp1b LOC106594183 coding downstream 67565 7496183 ~ 7531274 (+)
creb5b LOC106573409 coding downstream 187292 7615910 ~ 7706660 (+)
chn2 chn2 coding downstream 304339 7732957 ~ 7805441 (+)
plekha8 plekha8 coding downstream 386632 7815250 ~ 7829304 (+)
LOC110514761 LOC106597212 coding downstream 401605 7830223 ~ 7857449 (+)
G110223 NA non-coding upstream 2300 7425546 ~ 7425830 (+)
G110218 NA non-coding upstream 21271 7405057 ~ 7406859 (+)
G110215 NA non-coding upstream 25934 7401533 ~ 7402196 (+)
G110208 NA non-coding upstream 41491 7385958 ~ 7386639 (+)
G110184 NA non-coding upstream 82408 7344697 ~ 7345722 (+)
G110228 NA non-coding downstream 4718 7433336 ~ 7433548 (+)
G110233 NA non-coding downstream 10692 7439310 ~ 7439581 (+)
G110231 NA non-coding downstream 11852 7440470 ~ 7441060 (+)
G110237 NA non-coding downstream 16918 7445536 ~ 7445801 (+)
G110266 NA non-coding downstream 53290 7481908 ~ 7482365 (+)
G109821 NA other upstream 287151 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 485047 6941465 ~ 6944043 (+)
malsu1 malsu1 other upstream 516925 6908511 ~ 6911256 (+)
rbm24b LOC106596654 other upstream 559154 6855864 ~ 6868976 (+)
G110644 NA other downstream 469978 7898596 ~ 7935137 (+)
G110674 NA other downstream 644748 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1608186 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1792867 9221418 ~ 9229025 (+)

Expression


Co-expression Network