XLOC_002087 (pcdh1g14)


Basic Information

Item Value
gene id XLOC_002087
gene name pcdh1g14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21726853 ~ 21729246 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004052
ATGCTCGATGCAAAGGTGCTGCACTGGGTCCTTTTGTTTACTCTTCTGGTTCACATAGCGCGAGGACAGGTCAGTTACCCCATTCCAGAAGAAATGGCAAAAGGATCAATGGTTGGAAACATCGCACAGGATTTGGGCTTGGATTTAAAGCGATTGAAATCAGGAAAAGCTCGAATATTTACTAGCGACAGCACGGAATACATCGAACTGAACAGAAACACGGGATTGCTGCTCATCAAAGAGAAAATGGATCGCGAGTCTCTTTGTGGAAAAACAACACCGTGTGCTTTACACCTTCAAATGATTTTGGATAACCCAATGGAATTCTACACAATAGCAGTCGAAATCACTGATATAAACGATAACGCTCCCAGTTTCCAGAAAAAGGACTTCAGATTTGAGATCAGTGAATCGTCGCTGGTTGGGGCTGGATTTATGCTCGGGAAAGCTTTTGATCCAGATGTAGGAACAAATTCACTTCAAAGCTACACGCTCAAACCGACTGATACGTTCCGTCTCGAGTTGCACAGTCAAGCAGACGGTAGTAAAAACGTCGAAATGGTTTTACAAAGACCACTAGATAGAGAGACGCAAAGCTCATTTACATTGCTGTTAGAAGCGTTTGATGGAGGCAATCCAGTGCGTTCAGGTACTGTTCAGATACATATTACAGTAttagataataatgataatgctcCAGTTTTTACCCAAAAAGAATATAAAACCACTATAGCGGAAAATGCACCAAAAGGTACCATATTAACAGTCGTGAGCGCGTCAGATGCAGATGAAGGGTCCAACGGTGTAGTGACGTACTACATATCGGACACAATGGACAGTAACGTGGTCGAAATATTTATTATCAATGAACAAACTGGTGAACTAATATTAAACGGGCATGTTGACTTTGAGAAGCTAAACCATTATGAGCTGAACGTTCAGGCAAAAGATCAAGGAGGACTCTCTAACACATGCAAAGTAATTATTGATGTGCTGGATGATAATGATAATTCGCCTAGTATTAAAATTGTGTCTAACTCTAATGCCATATCTGAGCAGTCAGAGGCTGGTACTGTTGTTGCGATTCTAAATGTTGATGATCGTGATTCGGATGCAAACGGCCAAGTTAAGTGCACATTGAGTGGTAACATTCCTTTTACAATAACATATCAGTCAAGTAGTTTCTTTAGCTTGCAAACAGAACATGAAATGGACAGAGAGAAAGAAATTGAGTATAATATCAATGTAATATGTAGTGATGAGGGAGTGCCTGCGCTCTCCAGCAGTGTCACTCTTCGTGTGCAGATATCAGATGTGAATGATAATGCTCCTGTCTTTGAGAAGAGTAAATATGAGGCCTTTGTCGTGGAGAATAACACACCTGGTCTCTCTATATTTACAGTCAAAGCCAGTGATGCTGACTGGAATCAGAATGCTCGTGTTTCTTATATTCTTGAAGACAGCACTGTTAATGGAGTCTCGATCTCATCATATGTGTCAGTGCACCCTGACAGCGGACTGATTACAGCTGTGCGCTCTTTTGACTATGAGACACTGAAAGATTTCAACTTCCGCGTAAAAGCGCAGGACGGAGGCTCTCCTCCGCTCAGTAGTAACGTGACAGTGAAAGTTACTGTTCAAGACCAGAATGACAACGCTCCTCAGGTTCTGTATCCAGTACAGACTGGCGCTTCAGTGGTGGCTGAGATTGTgcctcgtgctgcagatgttgGATATCTGGTCACTAAAGTTGTGGCTGTTGATGTGGACTCTGGTCAGAATGCCTGGCTCTCCTATAAACTGCAGAAAGCTCCAGACAGAGCGCTGTTTGAAGTGGGTTTACAGAATGGAGAAATAAGAACTGTGCGACAAGTCACTGATAAAGATGCTGTCAAACAAAAACTCACTGTTGTTGTGGAGGATAACGGACAGCCCTCTCGCTCAGCTGTGGTCTCCATTAACGTGGCTGTGGCTGACAGCTTTCCTGAAGTGCTGTCAGAGTTCACAGACTTTACGCATGAGAAACAATATAACGACAgcttaactttttatttagttcTCGCACTGGCCGCTGTTTCTTTCCTATTCATCACTTGTGTGGTTGTGATAATATCAGTTAAAATCTACAAATGGAGACAATCTCGCTTCCTCTATCAGTCCAATCTGCCTGTTATTCCGTACTATCCACCGCATTACGCAGACACAGGAGTCACTGGAACTCTGCCGCACGGCTATAATTATGAAGTGTGCATGACGACTGACTCGAGGAAAAGTGACTGTAAGTTTTCTACACTCGGGGGTCAGAGTGTTTTAGTGGTGGACCCCAGTTTCACTGAGATGATGCAGCACACGATCAAGAAAAGTAATACTTCAGAAAGTGAATACTCAACATCG

Function

symbol description
pcdh1g14 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050609-9 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000104057

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004052 True 2394 mRNA 0.43 1 21726853 21729246

Neighbor

gene id symbol gene type direction distance location
XLOC_002086 pcdh1g13 coding upstream 1541 21722892 ~ 21725312 (+)
XLOC_002084 CT737184.2 coding upstream 50434 21668606 ~ 21676419 (+)
XLOC_002085 CT737184.1 coding upstream 52395 21670831 ~ 21674458 (+)
XLOC_002082 pcdh1a6 coding upstream 77681 21559605 ~ 21649172 (+)
XLOC_002081 NA coding upstream 183291 21542521 ~ 21543562 (+)
XLOC_002088 NA coding downstream 16016 21745262 ~ 21745505 (+)
XLOC_002089 cbln17 coding downstream 138061 21867307 ~ 21870457 (+)
XLOC_002090 hrh2b coding downstream 170507 21899753 ~ 21909696 (+)
XLOC_002091 NA coding downstream 176906 21906152 ~ 21906377 (+)
XLOC_002092 NA coding downstream 185389 21914635 ~ 21944085 (+)
XLOC_002077 BX465186.1 non-coding upstream 321882 21397320 ~ 21404971 (+)
XLOC_002075 BX004886.1 non-coding upstream 490175 21236564 ~ 21236678 (+)
XLOC_002074 NA non-coding upstream 518653 21179484 ~ 21208200 (+)
XLOC_002093 NA non-coding downstream 188631 21917877 ~ 21945344 (+)
XLOC_002094 NA non-coding downstream 207032 21936278 ~ 21949408 (+)

Expression


Co-expression Network