G110642


Basic Information

Item Value
gene id G110642
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7871758 ~ 7872286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU126121
cattttatgatttttaataGGTTCAAAAAGTTGGTTGAAAATACACTTGCACTTACAAGAGCTTACATGGTTCTCGAATGAATCAGGTCTCTGCATATAAATACTTAGGGATATGGTTGGATGATGAACTGTCTTTTAAAATGCATATTGACGAACTTTGTAAACGGCTAAAAATCAAGCTAGGCTTCCTCTATAGAGACAGGACATGTTTGTCCTGTACAAATAGAAGACAAATTGTGCAAGCTACTTTTATGTCTGTTATAGATTATGGGGATATTATCTACATGCATGCTACGGCATCAACACTTAAATCGCTGGATGCTATTTATCATTGAGTACTTAGGTTTATTACGGACgctagctacagaactcaccactgtgttttgtATCAAAATGTGGGTTGGACTTCGCTGTCCATGAGACGAGAATATGTTCTCGTGTTTGTCTATGAAGCACTTCTGAATAAACTACCATCTTATTTATCATCACTCATCAATATTAGAATTAGAATTCCTAAAACCAGGTCTCA

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126121 True 529 lncRNA 0.36 1 7871758 7872286

Neighbor

gene id symbol gene type direction distance location
LOC110514761 LOC106597212 coding upstream 14309 7830223 ~ 7857449 (+)
plekha8 plekha8 coding upstream 42454 7815250 ~ 7829304 (+)
chn2 chn2 coding upstream 66317 7732957 ~ 7805441 (+)
creb5b LOC106573409 coding upstream 165098 7615910 ~ 7706660 (+)
tax1bp1b LOC106594183 coding upstream 340484 7496183 ~ 7531274 (+)
LOC100136727 LOC100136727 coding downstream 96812 7969098 ~ 7971187 (+)
LOC118937630 LOC100136727 coding downstream 113542 7985828 ~ 7988121 (+)
LOC118937631 LOC100136727 coding downstream 134545 8006831 ~ 8014142 (+)
LOC118937632 LOC100136727 coding downstream 145992 8018278 ~ 8020571 (+)
LOC118937633 LOC100136727 coding downstream 153684 8025970 ~ 8028263 (+)
G110409 NA non-coding upstream 20171 7849144 ~ 7851587 (+)
G110405 NA non-coding upstream 32225 7838484 ~ 7839533 (+)
G110329 NA non-coding upstream 61769 7809544 ~ 7809989 (+)
G110322 NA non-coding upstream 157572 7713124 ~ 7714186 (+)
G110330 NA non-coding upstream 159475 7711599 ~ 7712283 (+)
G110646 NA non-coding downstream 7574 7879860 ~ 7904188 (+)
G110660 NA non-coding downstream 40245 7912531 ~ 7981149 (+)
G110673 NA non-coding downstream 183289 8055575 ~ 8138469 (+)
G110702 NA non-coding downstream 257475 8129761 ~ 8132133 (+)
G110751 NA non-coding downstream 401705 8273991 ~ 8274437 (+)
pde11al LOC106573285 other upstream 567113 7282430 ~ 7304709 (+)
G109821 NA other upstream 730779 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 928675 6941465 ~ 6944043 (+)
malsu1 malsu1 other upstream 960553 6908511 ~ 6911256 (+)
G110644 NA other downstream 26310 7898596 ~ 7935137 (+)
G110674 NA other downstream 201080 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1164518 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1349199 9221418 ~ 9229025 (+)
G111453 NA other downstream 1457983 9330269 ~ 9331616 (+)

Expression


Co-expression Network