G110936


Basic Information

Item Value
gene id G110936
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 8377245 ~ 8379321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU126488
ACGGAATATTTACACTGTATACTGCCAGTGTAGAGTGTAATGTGTAAAACAGGTTTTATTTCAGTCCTACAGTACCAGAATGTTTAATAGATCTTATTGCTACTCCTCTAGCCTCCGTTGGAGCGCCAGACCTTCATGAAACATTCATCCACGGTGACACCAAGGTCAGCAGAATTAATAAGGGAAGGGTGAAACTGTTTATCCAAGTGTGGCTTCATGTCACGTGGACTCACTCCTCAGGAATCTAAggctgtttcccaaatggcaccctattccctatatactgcattactttagaccaaggGCCTAGGACCCattgggttctggtcaaaagtagtgcactataaaggaaaacaggtttccatttgggatgcacacaaacTCTTGTTGGTTAGTGTTTCATATGACATTTCTCTAATCTGATTTCAGTAATTTACTGGAATGGTGGtagatggggtgggggggggggggttctatgtGTGATGTTGCCTCAACACATTTGAATAATGAACGCTATCCATGACAGGTATGAGACTAGCAAACACAAACAGCCAAGATGTAATAATAAGACAAGTGAACTGGGCCAGGGTGTAAGGTGATATCTGTCAGGGTGTAAGGTGATATCTGTCAGCGTGCAACCCTCTGCTTTGAACTTGATTTATCACACAGGTCACAAACAGCAAGGCTGTTCCCTCCAGCAGGACGGAGCCAGCACCCTGGTGACACGGTGATTGGGGAGGGAGATAAGTCAAGCTTTACATCGTCCTGCATCGTTAAAGCAGGGAGATACCAGGGTCCTCGGAACGGGCCAGCgttctaaatggcaccctattccctacatagtgcactatttggaccagaaccctatgggtcactacatagggaatatgcatgtagtgcactatatagggaatagggtgccatttgagaggcaGATGGGTTTCCTGTACAGACACATGACACTGTGGTATTATGTCTAAGAGGTTTTGGGTTGTTTAACGAGACTGAACACTTTCAACTCTCAACTTCTGTGACCCCCCGGATTAGTTTCACAAACATCTCAATCTAATATAGATGATACAGTTAGATACAGTCGGGTCATCGTACATAGTTCAGGAGTTAAAACAGCCTTCCATGTCTTTAGTATCGTAAAACCAAATCTTGTTACAAAACTTTTTGAAGATAACTTCTCATCAAGCACCAAATATTAATATTCACAATAAAATGTGTCAACATACATGTTctctaaataaataaaagaaaagCAAAAATGGGTATTTATAAGCTATACCATAATCAAAAAAATACTTGTAAAACATAACATCTATAAATATAATCCTAAAAAGAAAGTGTGTGCAATTTCCCTATTGTAACTAGTGATCATCCACCCACTATTTTGTCAGTATCAATTCCTAAATATTGCATCTTTGCAAACTTGTCCATGTTAGCTTCAGTATGACTGTTGTTTGTGTCATACAGTTCTCCATGGTATTCTATCCTGTAGTGGCATTTTGCATGTATGAGTATCACATCAGTATTCCACATGGTCTCATCTGGAGAAGTTCATTTGATGTGGGCCTATGTGTTGAGAGGAACTGTGGTCCTCTCCAGCCCTGTTCAGTCCAGAAGCAGATGCACCAGGATATCCATTGGTAGATTCAGTCGGACCACAATGGAAACTTGCAGTCAGGATCATCTCTTACACCATCCAATCAACTTTTGTTTgttccttgttgttgttgttgttgttgttgtcagggTCACCTGACCAGGTGGCTGATGATGAGGACTATATCCTGTGCAGTGTCATCTTGGCAGAGGGACACGGTTCTGGGGCCATATGTGATGAGTCAGCCTGTTGACGACCTGCTTCACAAACGCCCCTGCTGGGAAATGAGGACAGAGATGCTGGTGACTCATAGATACTAGAACACTAAAGCCTGGCTTGTCGCCCTAACAACCActcaaaacaaagaacaaaagaTAAAACGTCCCGCCAAAAATAATGGTAAGAACTACACCCGAAGACACTTCCAATccccaatgttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126488 True 2055 lncRNA 0.42 2 8377245 8379321

Neighbor

gene id symbol gene type direction distance location
LOC110514591 LOC106595161 coding upstream 49515 8205100 ~ 8327730 (+)
LOC118944039 NA coding upstream 114514 8235903 ~ 8262731 (+)
LOC118936503 LOC106605709 coding upstream 218209 8132439 ~ 8159036 (+)
LOC118936929 LOC100136727 coding upstream 324215 8050410 ~ 8053030 (+)
LOC110516794 LOC100136727 coding upstream 336674 8033190 ~ 8040571 (+)
LOC118936502 LOC106574003 coding downstream 101195 8480516 ~ 8505603 (+)
LOC118937640 NA coding downstream 248450 8627771 ~ 8645961 (+)
LOC110518388 LOC106598833 coding downstream 441038 8820359 ~ 9072449 (+)
LOC110520725 LOC106605921 coding downstream 711239 9090560 ~ 9101359 (+)
LOC110506654 NA coding downstream 724191 9103512 ~ 9105845 (+)
G110904 NA non-coding upstream 32774 8344188 ~ 8344471 (+)
G110900 NA non-coding upstream 37124 8339911 ~ 8340121 (+)
G110717 NA non-coding upstream 48016 8284310 ~ 8329229 (+)
G110751 NA non-coding upstream 102808 8273991 ~ 8274437 (+)
G110673 NA non-coding upstream 238776 8055575 ~ 8138469 (+)
G110981 NA non-coding downstream 42639 8421960 ~ 8422251 (+)
G110991 NA non-coding downstream 84681 8464002 ~ 8466672 (+)
G110994 NA non-coding downstream 87509 8466830 ~ 8467029 (+)
G111015 NA non-coding downstream 142719 8522040 ~ 8522763 (+)
G111067 NA non-coding downstream 162295 8541616 ~ 8541876 (+)
G110674 NA other upstream 273325 8073366 ~ 8103920 (+)
G110644 NA other upstream 442108 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 670756 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 1072600 7282430 ~ 7304709 (+)
G109821 NA other upstream 1236266 7135247 ~ 7140979 (+)
LOC110535224 aif1 other downstream 842164 9221418 ~ 9229025 (+)
G111453 NA other downstream 950948 9330269 ~ 9331616 (+)
G111788 NA other downstream 1060988 9440309 ~ 9444041 (+)
LOC110506952 LOC106606100 other downstream 1322719 9701990 ~ 9742723 (+)

Expression


Co-expression Network