G111258


Basic Information

Item Value
gene id G111258
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9124251 ~ 9131154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU126889
CAGAAAGTGATTCAACTGTACCTGTGCAGCCTCGTCCCAATAGTTGTAGACAACAGGAGCAATAGACATTTGCTCAAATCTTTTGACTGAGTACGGCAGCCTCAGAGAGACAAAAACCTTCTTAAACACACGGAACTCATGTGGTTCTGCCACACAGATGCCTGCaggagggacacacacagacaggtccaTTACTCTCCAGAATGACACCACACGTTCCTTACTGTCTAGGTACAGGAATATGAACCAATAGAGGAGGAAGATGTTACCATGAGAAGCAGACAAGCTGACAGCCTGTATCTCCCAGGTGGTGATGGAATCAGGCAGAGCCACAGTATGACtacgggagacagagagagagacaaattacAATAGTGTTTCAGACACATGGCGCCGATATACTGTGTGTCTAAATGTCCATTTCTCACCTTCCTTTGCCGTTTATATCGACCACTGCGAATGCAAAGCTTGGGGGGAAACTTCTGCGTATTTGCTGATTGGTTGTGTCAAAAAAGTCTTCGATGTCTGTGGCACTCgcagctgagaggagagagtgtagaCTAAAGGTGTCACAATAATATAACCTTTTAAGATCGTATTCTCATCCAATCCTTTTAAGTTATAACAAGTCAGACATGTCTGTCTAAAGGATAGTGTCTGTTATCATTTTGTTACCATGTTATACATGTTAGTGTCAGGTgggtgaatgaggacccaaaagcgaattaacaaaacagagtttctttaatgacgaaacacacgtggctcagatggacaggcagattccgacaggacaggacaaggttggatgaacaggcagattccgacaggacaggacaaggttacagcaaacacgacgatagtctggttcaggcatgagaaacacaaacgagaatccgacaaagacagaagcaggaacagagagagatatagagacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagttagaggagacaaggaacagctgggggaaggagggtaagaaaaggtaacctaatacgaccagcagagggagacagggtgaagagaaagaacaggaacaagacacaacatgacaatacatgacagttagAATGGTAATATCCCCAACAATCAAGTCATCCTCACTCCTGCCATGTCCTCTCTGGGCGTCGTCTCGTTTCTTCTTCTCCCTCAACTTCTCTCCCTCTATGCAGCAGTCCAGGAAGGCCTTGACACAGACACGGTCCTTATTGGCTCGTGCCACTCTCTCGGCTCTCTGCTGACACGTCCTCAGCATGGGGATCAGGGACAAGCCATGAGAACAACACTCCTGCAGCTTGGCGTCTGAGTAACTGGATTCTGGGAGTTGGAGATGGTGAGGTAGTGACAAAAGGTTTTAGTTCGTACCTGCCAGGACTGATGAACAGTCTCTCCCACCACCTCAGGCAGCAGTTAGTGACAGTCAATAGTAAAGTAACGTTGTAATACTTATGGACACCATCTGCTTCTGGAGGTCCAGAGAACGCCTCTGTCGTCTGAAGCCTGACTCACAGTTAAACCCtaagacaaacacacatacagtagggtGAAGACCATCAACATAAAACATCAACATATTGTGGGAACATGTAGGTTTTGAGCAACTATGATGTCATTAATGCTTTGTTGAAATGTACGTCTGAGTTGGTGTTTTTTTTTCTATTTGTTTTTCCTTTATGTTGAAGGTTGGGATTTAAGTCCCAGACAATGTCATGTCTAGTTTAGTGGATCCATGTCTGTGAAATGTTAAGTTGTCTACCTCCTAAAggggttttaaccctatcccagagAACATCATTCAGAAACTATGGACCAAAGAAGAAGTAGTGTAGACACTAGACAGCTGTATTGTTTAATCACACTACGTTCGTCATACCCTTCCTCATCCTAGATAGCACATGAGAGTTGGAGATGAATGACAAGCCAGCATCGTTCAACACAGAGGCTGTATCTGAGCCGCCACCGTATGAGCAACCAAGGTCATAGGACTGCATGGACGAGAATACCTGTGAACAGCACACAAAATATTCACACTATTAGTCAAAAAGAGCCGTTTGGTCTTTATTGCATAGAATATATTTATACCTGTACATTATAAGGAGTGCGTTTTAGAGGAAACAATGTTGAGGAGACAATATGTATAATTATTCTTTAGTAAATATTAGcttgtatatg

Function

NR:

description
complement C4-like, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU126889 True 2218 lncRNA 0.39 2 9124251 9131154

Neighbor

gene id symbol gene type direction distance location
LOC110520726 LOC106605921 coding upstream 13479 9106304 ~ 9110772 (+)
LOC110506654 NA coding upstream 18406 9103512 ~ 9105845 (+)
LOC110520725 LOC106605921 coding upstream 22892 9090560 ~ 9101359 (+)
LOC110518388 LOC106598833 coding upstream 51802 8820359 ~ 9072449 (+)
LOC118937640 NA coding upstream 478290 8627771 ~ 8645961 (+)
LOC110534026 LOC106606081 coding downstream 18019 9149173 ~ 9168951 (+)
LOC110535199 LOC106606086 coding downstream 44516 9175670 ~ 9189203 (+)
LOC118937651 LOC106606075 coding downstream 80920 9212074 ~ 9216058 (+)
LOC110535224 aif1 coding downstream 90264 9221418 ~ 9229025 (+)
LOC110535231 LOC106573472 coding downstream 108742 9239896 ~ 9243612 (+)
G111254 NA non-coding upstream 36 9116533 ~ 9124215 (+)
G111368 NA non-coding upstream 57585 9066381 ~ 9066666 (+)
G111367 NA non-coding upstream 58339 9065546 ~ 9065912 (+)
G111365 NA non-coding upstream 68429 9055284 ~ 9055822 (+)
G111257 NA non-coding downstream 7256 9138410 ~ 9144906 (+)
G111384 NA non-coding downstream 14556 9145710 ~ 9146042 (+)
G111386 NA non-coding downstream 17702 9148856 ~ 9149078 (+)
G111394 NA non-coding downstream 40174 9171328 ~ 9171571 (+)
G111398 NA non-coding downstream 65091 9196245 ~ 9196496 (+)
G110674 NA other upstream 1020331 8073366 ~ 8103920 (+)
G110644 NA other upstream 1189114 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 1417762 7615910 ~ 7706660 (+)
pde11al LOC106573285 other upstream 1819606 7282430 ~ 7304709 (+)
G111453 NA other downstream 199115 9330269 ~ 9331616 (+)
G111788 NA other downstream 309155 9440309 ~ 9444041 (+)
LOC110506952 LOC106606100 other downstream 570886 9701990 ~ 9742723 (+)
LOC118937659 NA other downstream 643049 9773574 ~ 9776807 (+)

Expression


Co-expression Network