G111725 (aif1)


Basic Information

Item Value
gene id G111725
gene name aif1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9221244 ~ 9228224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU127485
CTTTCACTTTGAGTGATGTTTTTCACCATTACACAAACACTCAAATCTGTTATGGGATTCTATCATTTTATCAGAAATGCTGACAATTGATATACTTTGTTAAGTATATTCGATCAAGAGCTTGATATGAGGTTCTGCAGCTGCACACACGTTTTTCACCAACAAATGGACAAGCCTATGGATCAATCAAACCTTTCTTTATTCCTTACAATGAAACCTGTATAACCCAGTTCATTTGACATTCAGTTTTTATATGAACAGATTGGATCCATAACGTAATTGCCTTcagggcagatctgaaaaagtcTTGCGTTGCGGTGGTCCACTCTCTTTGGGCTCCTGGTCTTTCCCTTTCTCCTCAAACATCAAGATCAGTCGGAGTATGGAATTCCTCTTCCCTAGCATCATATTGAGAAAGTCTGTGTAACAGAACGTGTCTCGTGCAGCACCGCCAACCACATCTGACATCATCTTTTTCAGCTCCAAGTGAGTCTTTGCCACACCCAGCTTCTCCAACATGCGCTTCAGCCCCATCATGTCAATGTCTCCTTGGTCATTGAGATCAAATTCCATGTATTTGTTTTTAAACATTTCCAGTTTTGAGCTGAGGTCCTCCTCCTCTGCATATTTAGGATCTGTGAGAAAAACCTCATTGATGGAGTTCAGTTTCACATCCTGCTGAGACTTGAGGAATCCAAATGCTTTCCCTCCTTGCAAATGTTTGTCCATGTCAATCTGCTGTTATTTGGTGGATCATAGAGTAGTTAAAGGGACCAGGGGTGGCTGAGCGTTGTGTCATGAACACTGAAAGTGTAAAGTATGTATCTGTATTTTGTGACAGAAGAGGAAGTGTGGGGAGTTAAAGTTAGAGTGTGGTCATTTGCTAAGTTCCCCTCTCACATCCACTCACAGCCGACggaacagacagagaacaaaGAGAGTCTATGGAGGGGACAATGAACTAAGGGGTTTGCATTTGACATATGCTAGACTAGGCTACCACATAAACACTGCACACTACATTATTgtctacatatt

Function

symbol description
aif1 Enables actin filament binding activity. Involved in several processes, including positive regulation of cytokine production; regulation of cell migration; and regulation of smooth muscle cell proliferation. Located in cytosol; nucleus; and perinuclear region of cytoplasm. Colocalizes with actin filament and ruffle membrane. Implicated in type 1 diabetes mellitus. Biomarker of Alzheimer's disease and brain infarction.

NR:

description
allograft inflammatory factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127485 True 1038 lncRNA 0.42 6 9221244 9228224

Neighbor

gene id symbol gene type direction distance location
LOC110534043 LOC106606076 coding downstream 971 9215383 ~ 9220273 (-)
LOC110534035 LOC106573444 coding downstream 9811 9188928 ~ 9211433 (-)
LOC110506677 c4 coding downstream 79530 9116566 ~ 9141714 (-)
LOC110506642 LOC106606082 coding downstream 133324 9074773 ~ 9087920 (-)
LOC110514444 LOC108270036 coding downstream 402167 8804202 ~ 8819077 (-)
LOC110510828 LOC106606088 coding upstream 17221 9245445 ~ 9284745 (-)
LOC118944050 LOC106593475 coding upstream 56064 9284288 ~ 9302415 (-)
LOC110506813 LOC106573659 coding upstream 87629 9315853 ~ 9321654 (-)
LOC118937655 pon2 coding upstream 94536 9322760 ~ 9328762 (-)
LOC110520732 LOC106605979 coding upstream 102047 9330271 ~ 9349305 (-)
G111718 NA non-coding downstream 10593 9210381 ~ 9210651 (-)
G111716 NA non-coding downstream 12282 9208013 ~ 9208962 (-)
G111692 NA non-coding downstream 30744 9176228 ~ 9190500 (-)
G111698 NA non-coding downstream 36919 9183766 ~ 9184325 (-)
G111688 NA non-coding downstream 55536 9165040 ~ 9165708 (-)
G111731 NA non-coding upstream 8003 9236227 ~ 9237570 (-)
G111732 NA non-coding upstream 10422 9238646 ~ 9238908 (-)
G111734 NA non-coding upstream 45996 9274220 ~ 9276631 (-)
G111703 LOC106596109 non-coding upstream 55671 9283895 ~ 9304801 (-)
G111659 NA other downstream 153182 9067612 ~ 9068062 (-)
G111650 NA other downstream 170446 9050289 ~ 9050798 (-)
LOC110519098 LOC106594466 other downstream 448424 8769881 ~ 8782987 (-)
LOC110535184 LOC106605879 other downstream 484846 8693136 ~ 8752164 (-)
G111044 NA other downstream 698483 8522002 ~ 8522761 (-)
G111855 NA other upstream 211138 9439362 ~ 9439938 (-)
G111955 NA other upstream 406313 9634537 ~ 9635130 (-)
G112066 NA other upstream 533076 9761300 ~ 9761665 (-)
G112076 LOC105018850 other upstream 550787 9779011 ~ 9780455 (-)
LOC110493960 LOC106606059 other upstream 772506 10000730 ~ 10007883 (-)

Expression


Co-expression Network