G111405


Basic Information

Item Value
gene id G111405
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9245445 ~ 9247633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU127079
TTGATAATTCATCctgattttatttaattttaaagACAGGGATAAGTCACAAAAGCAATAAGTTTACATATCTAAAAACGAAGGACTCCGCTGAGATTCTAGTTTATGCCCTCAAGATCCTTCTAGCTAATAGTTTGTGCCACCTTCACAAACTTCTTCAGAGGGGAAGAAAGGTCTGCTACCAATTGTCATTCTCTAAAAGGGTTGTCATACAAGTATCTTTATCTGATCTACAAAAGGACAGGGTACACCAACTGGTAGAGGAATCTACTCTAAAACAGGTGGTAAGAAAGATTTACAAACTAGATGATTATGAATGTGACTTCTGTGTCTAAAAGCCTGCGAACAGGCTCGTGTTTTAAAAAACATCCCAGTACAAAGAATCACATGAAACAGTCTCTACTTTACAAAGAAATGATGGTAGAACATGTACAAAAGGACTAAATATGTTCCCCTGTATGAAATAAAAGCCACATACACTGGGACAGCTGCCTTTTGATAGTGATAAATACATCTTGCACAGGTTTAAGTGTTTAAGAGCTGAGAATCATTTGGACCCATCTGCAGGGCTAGAATGTACATTAAGACTGAACATTCTTCATACAATCATATACAGAGGGGTTTTGTCCTGCAGTATTGATAAAGACATAAAACCTGAGAAACAGACTAAAGCATTGTTTCATCAAATCAACCACATTTCTATCTAAAATCATTTTAAGGGACAAAACACAGCGGGACTTTCCATTGCTCTCACGTCAGACTGCATGGGGCAGTCCTAGAGGTCAATGGTGCGTTAAAAGAGGAAGAAAAACAATGGTGAATATGTACTGGGAAACATGGGGACACTCCCAAATtcaagctgtaaaaaaaaaagaagacaataTTGATATGAGAAGCTACCATTGAGTAGGATATGAACTTCAATAACTTAAACACCTCATTTTGTACAAATACTATAAAACCAGTAATGCTATAAAATAGAGTAAACATTTCAAAACAGATAGTTGTCATCACGTCAAAGTTTATACCGAGGGTCATCGTGGCCTGACCTAGTAGTATTACACATGTTAACTTGGCtggttgagaaagagagagtttacCTGAGCAGAGAACAAATCCAAAACAGGCATGGTTGTTGGAGTATGCAATATCTTTGTTCAATACTTTTAAGTGAGGTATGTCATTTCAATTTGAATATTCAATCAAAAAAAAGAATATTCCTCAATTATAAACATAAACAAACTCAAAGGAGTTATCCCTTTCCAAAAATAGGTCTAGTTTCTGTCCGGCATCTTAATCTGATTGAAAAAGTCTGATAATGTTATTACTTAAAGCCCAGTTGAAAACAGTGCATTTCTGTCAAAATGAGCATGTTAAAGGGAGACTCAGTAAAATGCCGTTGCCTCGACCAGCACCGCAGATACTGAGATGAGCCAGATGCAAGACTTGGCTCTCACAcagtatctgcgcatgtgcacgGGTTCACTTCACTCTGTTCACAGCGTTGGAACCATGGCACCAAAACAGCGGAGAAGTCGAGCCTCTCGCTTCAACGTTCTTAGTTGTTTGGCTGAAATTGACCCACTacactgtttactttctgcatctccGTCATATCACTGAGTCCACACTCAATGACACAGTAGTGGCAATACAAACGACAGAAAAATATGttgtaaataaacatttaaacGCAAATGACCTAAATGCTCTTAGAACTGAAAAGGTTCATCTTTCCTACTAtcataatacaaaaaaaaaaagagtaattTGGCGAAATATCAGGTTTGAGTGGAATAGACCAAAATGAAGCCAACATACAGTCAGAACAGCAGTATGGAAAGAGAGGACACAATAGGCTTTCTCCCTGGCCTGTTCATATCCCACTGGGCAGGGAGACaccaggatgcatcccaaatggcaccatattccctttataatgcactacttttaaccaggactCTGGTCAAGAGATGTAACCACAGTGGTTCTAGAGGGGACCAGTCAGGACACAATGTCCGTATGGGTTGAGGAGGTGGGGGTGGCTCTGGGACAGGGAGGTTAGTCTGTACTACAAAGCTCTGGTGTCTTGAGCATCAGATCCATAGGGCTCCCTGACTGTGTGTTGAGCTGAATCACATTGCTGTTGCTCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU127079 True 2153 lncRNA 0.39 2 9245445 9247633

Neighbor

gene id symbol gene type direction distance location
LOC110535231 LOC106573472 coding upstream 1833 9239896 ~ 9243612 (+)
LOC110535224 aif1 coding upstream 17145 9221418 ~ 9229025 (+)
LOC118937651 LOC106606075 coding upstream 30305 9212074 ~ 9216058 (+)
LOC110535199 LOC106606086 coding upstream 56242 9175670 ~ 9189203 (+)
LOC110534026 LOC106606081 coding upstream 76494 9149173 ~ 9168951 (+)
LOC110520731 LOC106605982 coding downstream 62351 9309984 ~ 9315691 (+)
LOC118944051 LOC106573691 coding downstream 107389 9355022 ~ 9358422 (+)
LOC110519250 mroh1 coding downstream 197557 9445190 ~ 9482500 (+)
LOC110506885 LOC106573706 coding downstream 301069 9548702 ~ 9551644 (+)
LOC110506952 LOC106606100 coding downstream 454357 9701990 ~ 9742723 (+)
G111433 NA non-coding upstream 9887 9235349 ~ 9235558 (+)
G111422 NA non-coding upstream 21540 9218727 ~ 9223905 (+)
G111398 NA non-coding upstream 48949 9196245 ~ 9196496 (+)
G111394 NA non-coding upstream 73874 9171328 ~ 9171571 (+)
G111414 NA non-coding downstream 28378 9276011 ~ 9276847 (+)
G111417 NA non-coding downstream 29899 9277532 ~ 9278357 (+)
G111404 NA non-coding downstream 36887 9284520 ~ 9285599 (+)
G111446 NA non-coding downstream 60593 9308226 ~ 9308477 (+)
G111451 NA non-coding downstream 75237 9322870 ~ 9324339 (+)
LOC110518388 LOC106598833 other upstream 207544 8820359 ~ 9072449 (+)
G110674 NA other upstream 1141525 8073366 ~ 8103920 (+)
G110644 NA other upstream 1310308 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 1538956 7615910 ~ 7706660 (+)
G111453 NA other downstream 82636 9330269 ~ 9331616 (+)
G111788 NA other downstream 192676 9440309 ~ 9444041 (+)
LOC118937659 NA other downstream 526570 9773574 ~ 9776807 (+)
G112697 NA other downstream 1563885 10811518 ~ 10826063 (+)

Expression


Co-expression Network