G111446


Basic Information

Item Value
gene id G111446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9308226 ~ 9308477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU127125
ggggtaaatacaggcaaatatattgataaaagtaacTTTGTCATAGAGATATTTACactgttatcaaaacatcacaccagggtaagcctacacaaaacacatgccttatttgaagtgtttctaaaatcccttaTGGGGAAAATGACTGGtagaaaaacaattggaaccatttccctgtttgttatgggtattatgactcatactgtggtactctatagagagcaatagtacatggtgtctttttgtaggcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127125 True 252 lncRNA 0.55 1 9308226 9308477

Neighbor

gene id symbol gene type direction distance location
LOC110535231 LOC106573472 coding upstream 64614 9239896 ~ 9243612 (+)
LOC110535224 aif1 coding upstream 79926 9221418 ~ 9229025 (+)
LOC118937651 LOC106606075 coding upstream 93086 9212074 ~ 9216058 (+)
LOC110535199 LOC106606086 coding upstream 119023 9175670 ~ 9189203 (+)
LOC110534026 LOC106606081 coding upstream 139275 9149173 ~ 9168951 (+)
LOC110520731 LOC106605982 coding downstream 1507 9309984 ~ 9315691 (+)
LOC118944051 LOC106573691 coding downstream 46545 9355022 ~ 9358422 (+)
LOC110519250 mroh1 coding downstream 136713 9445190 ~ 9482500 (+)
LOC110506885 LOC106573706 coding downstream 240225 9548702 ~ 9551644 (+)
LOC110506952 LOC106606100 coding downstream 393513 9701990 ~ 9742723 (+)
G111404 NA non-coding upstream 22627 9284520 ~ 9285599 (+)
G111417 NA non-coding upstream 29869 9277532 ~ 9278357 (+)
G111414 NA non-coding upstream 31379 9276011 ~ 9276847 (+)
G111405 NA non-coding upstream 60593 9245445 ~ 9247633 (+)
G111433 NA non-coding upstream 72668 9235349 ~ 9235558 (+)
G111451 NA non-coding downstream 14393 9322870 ~ 9324339 (+)
G111454 NA non-coding downstream 20631 9329108 ~ 9330101 (+)
G111453 NA non-coding downstream 21792 9330269 ~ 9331616 (+)
G111460 NA non-coding downstream 41302 9349779 ~ 9350032 (+)
G111477 NA non-coding downstream 83287 9391764 ~ 9392169 (+)
LOC110518388 LOC106598833 other upstream 270325 8820359 ~ 9072449 (+)
G110674 NA other upstream 1204306 8073366 ~ 8103920 (+)
G110644 NA other upstream 1373089 7898596 ~ 7935137 (+)
creb5b LOC106573409 other upstream 1601737 7615910 ~ 7706660 (+)
G111788 NA other downstream 131832 9440309 ~ 9444041 (+)
LOC118937659 NA other downstream 465726 9773574 ~ 9776807 (+)
G112697 NA other downstream 1503041 10811518 ~ 10826063 (+)

Expression


Co-expression Network