XLOC_020886 (CR450686.3)


Basic Information

Item Value
gene id XLOC_020886
gene name CR450686.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8790643 ~ 8797226 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041110
AGCTAAAAACTCAACTGCTGAAAGACAAAGGGGAGAAAACAACGAGGATGAATCGTAAAAGAAAGTTCTTCACCGAAGAGGTTGTGCTGTTGAACAATCAAAGCAGCGACGAGGAGACTGAGTTTGAGGACAGTGATGAAAGCGACGACGAAATGCATGTGCATGAAACACACGAACCTATTTTATACCTGCATTTAGCTGAATCCTCTGAGGAGGAGTGGGATTTTAACACCAACCAACAATCAGAAAAGAAGTTGATGCCTTCAGATTTACCAGACTCGGTATCCGTTTCATCAAGAAAAGGTCTCAGGCAATCAGCAAGATTGAGAGCCAGCAAAACCTGTTCTCCACCTGTTCCTCGTACACCCGAGGAGGGGTGAAATAATTCAACTGATGAGGATATAACACCTCGGCCTGCAGTCTTCAAAGCATCTCGAAGACCAGGCCCACAGTTAAACCCCTCTGCATCGTACAGTGTATTGAAATTGTTTCAGCTCTTCATCTCTCCATCAGTAGTGCAGACAATTGTGCAAAACACCAACGCCTATGGAGCCAAGCAACAAAAAGCCAAGTCCCAGTGGAAAGATATCTCCTGGATCGACCTATACTCTTATCTGCTGCTTGTGAAATACATGGGCATGTTGAAAATGCATTCGCTGACAGATTACTGGAGGAAATCTGACACCTTCAAAATCCCATTTCCAGCAGAAGTCATGTCTGCAAGGAGGTTCTTCTCCATCTCCTCCACTCTGCATCTCAGTGATCCTGAAGCGGATGCTGAAAACAAGAAGAAAATGGGAACACCTGCCTACGACAGCCTCTGCAAGATCAAGCCCATGAATCAACAGCTAAGAgaagcatgtaaaaaaaaactttcacccCTTTCAGAACATCACCATCGATGAGAGGAAGGTGAAAACTAAGCCTAGAAATCTTTCTGTGTTGTCCGACTCGCTCAGTGCGTACACATGGGACTTCTTCATCCAAGAAAGTAAATCGACAGGACAGTTTCCACAGAGCAATAAACTGGGTTGTGAGTCTGTCATGGAGCTTGTTGATGAGAAGATGTTGGGAACGGGCTACAAACTGTTACTCGGCAAAGTCAACACAAATCCAGCACTTTTTAGAGATCTTCTGAGGAAAAATATCTGAGCTTGTGGGACTGTTTGGTCTAATAGGCCGGGATACCCTAAAACCACGGTCAACAAGCTTCCGAAAAAAGCCCCTAGAGGGGCTATCTCTATTTGCAGAGTTCTAATTGGGGAAGATGGCTTTATTCTTAAAGGTGCATGGGTGGAGCAGTTGCAACGGAAACACTCTTCCGCTATTACTCAGTGTCACACAAGACAAGAAAGTGGTATCGTAGGTTTTTCTACGACTGTGTGGACATAGCCATCGCAAACGCCTTCGTCTTACATCGTGAAATGGCAGCTACGAACAAGCAAAAGCCAATGACACACAAGCAGTGCAGAGAAAAACTCTTTGAGGAACTTGCCATATTGGTGCTTCCAGATTTTCCATCATCTCCTCCGTCTCCTCCCGAGGACACTCGGCACTTACCAGGATACTTTGCTTCAGACAGCACCAAAGGAAGGCGCAATTGCAAAGTTTGTGGACAAAAAACACCAATTTATTGCAAGACTTGTTTAGTGGCGATGTGCTTTCAGCCGAAACGTGACTGCTTCTTTGCTTGGCATAACCAGCACTGACCTCTTCATTTCACACCTTGAACATCTGATGATGGACAGGAAAATAGTTTCTGAAAAACTGTGTGCTTCtagcaggtgagtgggctttacaaaccacctgtaggacacactctttTCTCTTCGTATTGTTTCTAGATTGCTCCAGgactgtttttatattaaataaagtgTGTTTAATGCTGC
>TCONS_00042337
AGCTAAAAACTCAACTGCTGAAAGACAAAGGGGAGAAAACAACGAGGATGAATCGTAAAAGAAAGTTCTTCACCGAAGAGGTTGTGCTGTTGAACAATCAAAGCAGCGACGAGGAGACTGAGTTTGAGGACAGTGATGAAAGCGACGACGAAATGCATGTGCATGAAACACACGAACCTATTTTATACCTGCATTTAGCTGAATCCTCTGAGGAGGAGTGGGATTTTAACACCAACCAACAATCAGAAAAGAAGTTGATGCCTTCAGATTTACCAGACTCGGTATCCGTTTCATCAAGAAAAGGTCTCAGGCAATCAGCAAGATTGAGAGCCAGCAAAACCTGTTCTCCACCTGTTCCTCGTACACCCGAGGAGGGGTGAAATAATTCAACTGATGAGGATATAACACCTCGGCCTGCAGTCTTCAAAGCATCTCGAAGACCAGGCCCACAGTTAAACCCCTCTGCATCGTACAGTGTATTGAAATTGTTTCAGCTCTTCATCTCTCCATCAGTAGTGCAGACAATTGTGCAAAACACCAACGCCTATGGAGCCAAGCAACAAAAAGCCAAGTCCCAGTGGAAAGATATCTCCTGGATCGACCTATACTCTTATCTGCTGCTTGTGAAATACATGGGCATGTTGAAAATGCATTCGCTGACAGATTACTGGAGGAAATCTGACACCTTCAAAATCCCATTTCCAGCAGAAGTCATGTCTGCAAGGAGGTTCTTCTCCATCTCCTCCACTCTGCATCTCAGTGATCCTGAAGCGGATGCTGAAAACAAGAAGAAAATGGGAACACCTGCCTACGACAGCCTCTGCAAGATCAAGCCCATGAATCAACAGCTAAGAgaagcatgtaaaaaaaa

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093787

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041110 False 1892 lncRNA 0.44 3 8790643 8797226
TCONS_00042337 True 871 lncRNA 0.45 2 8793185 8797226

Neighbor

gene id symbol gene type direction distance location
XLOC_020884 si:ch73-27e22.1 coding downstream 64875 8581752 ~ 8725768 (-)
XLOC_020885 CR450686.5 coding downstream 98338 8690263 ~ 8692305 (-)
XLOC_020882 zmp:0000001175 coding downstream 142499 8522577 ~ 8648144 (-)
XLOC_020881 CR974475.1 coding downstream 244213 8517657 ~ 8546430 (-)
XLOC_020883 si:ch73-27e22.2 coding downstream 254161 8531200 ~ 8536482 (-)
XLOC_020887 CABZ01046425.1 coding upstream 30121 8827347 ~ 8829082 (-)
XLOC_020888 CABZ01046427.1 coding upstream 46644 8843870 ~ 8876699 (-)
XLOC_020889 CABZ01046427.2 coding upstream 50605 8847831 ~ 8860869 (-)
XLOC_020890 CABZ01046432.1 coding upstream 81454 8878680 ~ 8883097 (-)
XLOC_020891 FO393424.2 coding upstream 106820 8904046 ~ 8910567 (-)
XLOC_020876 NA non-coding downstream 295694 8427935 ~ 8494949 (-)
XLOC_020877 NA non-coding downstream 346332 8439819 ~ 8444311 (-)
XLOC_020875 NA non-coding downstream 381562 8405161 ~ 8409081 (-)
XLOC_020873 CABZ01061495.2 non-coding downstream 444443 8346075 ~ 8346200 (-)
XLOC_020893 FO393424.4 non-coding upstream 142707 8939933 ~ 8951684 (-)
XLOC_020896 NA non-coding upstream 479130 9276356 ~ 9305802 (-)
XLOC_020897 NA non-coding upstream 481552 9278778 ~ 9315172 (-)
XLOC_020901 BX664625.4 non-coding upstream 916988 9714214 ~ 9714331 (-)
XLOC_020902 NA non-coding upstream 954944 9752170 ~ 9774043 (-)

Expression


Co-expression Network