G111900


Basic Information

Item Value
gene id G111900
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 9546059 ~ 9562951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU127715
gtgcgtgtgcgtgtgcgtgcgtgtgtgtgtgcgcaccgtCTGTGTTTGTAATATTctgttgttcaaatcaaatcaaatgttatttgtcacatgcgccgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgTTTAATTAAA
>TU127716
gtgcgtgtgcgtgtgcgtgcgtgtgtgtgtgcgcaccgtCTGTGTTTGTAATATTctgttgttcaaatcaaatcaaatgttatttgtcacatgcgccgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtcaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtaggtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgactaacaAGCCC
>TU127717
gtgcgtgtgcgtgtgcgtgcgtgtgtgtgtgcgcaccgtCTGTGTTTGTAATATTctgttgttcaaatcaaatcaaatgttatttgtcacatgcgccgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtcaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgaatacatcaggtgtagtagaccttacagtgaaatgctgactaacaAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127715 False 409 lncRNA 0.40 4 9546059 9562951
TU127716 False 681 lncRNA 0.41 2 9562119 9562951
TU127717 True 414 lncRNA 0.36 2 9562119 9562951

Neighbor

gene id symbol gene type direction distance location
LOC110512181 LOC106605978 coding downstream 142566 9392946 ~ 9403493 (-)
LOC110520732 LOC106605979 coding downstream 196754 9330271 ~ 9349305 (-)
LOC118937655 pon2 coding downstream 217297 9322760 ~ 9328762 (-)
LOC110506813 LOC106573659 coding downstream 224405 9315853 ~ 9321654 (-)
LOC118944050 LOC106593475 coding downstream 243644 9284288 ~ 9302415 (-)
LOC118937662 NA coding upstream 283579 9846044 ~ 9847233 (-)
LOC110507310 LOC106595913 coding upstream 347519 9910470 ~ 9913331 (-)
LOC110493960 LOC106606059 coding upstream 437785 10000730 ~ 10007883 (-)
trnaa-ugc-2 NA coding upstream 535951 10098902 ~ 10098977 (-)
LOC110507454 LOC106584706 coding upstream 699369 10262320 ~ 10267649 (-)
G111880 NA non-coding downstream 63576 9479680 ~ 9482483 (-)
G111856 NA non-coding downstream 104367 9440011 ~ 9441692 (-)
G111784 NA non-coding downstream 115517 9430332 ~ 9430542 (-)
G111782 NA non-coding downstream 116377 9429386 ~ 9429682 (-)
G111781 NA non-coding downstream 116705 9429142 ~ 9429354 (-)
G111944 NA non-coding upstream 60038 9622989 ~ 9623266 (-)
G111952 NA non-coding upstream 68036 9630987 ~ 9631217 (-)
G111961 NA non-coding upstream 79667 9642618 ~ 9642863 (-)
G111962 NA non-coding upstream 80074 9643025 ~ 9643234 (-)
G111963 NA non-coding upstream 80752 9643703 ~ 9644043 (-)
G111855 NA other downstream 106121 9439362 ~ 9439938 (-)
G111659 NA other downstream 477997 9067612 ~ 9068062 (-)
G111650 NA other downstream 495261 9050289 ~ 9050798 (-)
LOC110519098 LOC106594466 other downstream 773239 8769881 ~ 8782987 (-)
LOC110535184 LOC106605879 other downstream 809661 8693136 ~ 8752164 (-)
G111955 NA other upstream 71586 9634537 ~ 9635130 (-)
G112066 NA other upstream 198349 9761300 ~ 9761665 (-)
G112076 LOC105018850 other upstream 216060 9779011 ~ 9780455 (-)
G112491 LOC106584755 other upstream 655201 10184147 ~ 10296999 (-)

Expression


Co-expression Network