G112180


Basic Information

Item Value
gene id G112180
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10028035 ~ 10029544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU128046
GCTAGCTAgtgagcagagggagagaagagggagtatTTCCTTTTCAGTTGTAGACTTGGCACAGCCTGAAAGCCCAGTCCTGAGCTCTTCAGCTCCCTGCACAATACCTCACTTGTGCTGCTACTTTGGCCCAGGAATGTGAGGCTCACCTTCATATGTCTGACAGCAGTTTGTTTTGGAATGAGAGATATTATTCACCACCACATCGTACTGCTGCAAACATGGTTCTCTCATCGCCTCTTCGCTCTACCTCCCTCTGAAGAGTTGAGGCAGCCCCATATGATGCTGTTGAAACCCCCATAAACCACTGCTTTAGATAGTCTATTCATAAGATGTGAAAGTAATTGATCCTCACATCTTGAACAGTGTATTTTGTCAAGGCATGTATGCTACGTGTGGGCTAGGTGCAAAAACGTTGTTCAGAGTCTAATCATATAGCATACTTTTGTGTGTTCACATCGGCCTCTGGAAAACAGAGCCTGACACAATCTTAGCCTGTTAGATAAAGCCTAACCTAACACTACTATCTAATAAGAAAATGGAATGCCGGCAGCAGGAAAATAGGACCTTTCAGTAGCCAGTTGTACTCTGTACTGTACCGGGGCCTGATCTGAGTCCTTGACTAATCCTGATCAACAAAGGACATTGGAGGAAATGATTAGGGCTGTTTAACGTCAGTCTGTATTGATGTTGTACTTCATGATTCAGTGGCTGGGCAttcacactgactagactactaCTGTATGGGCACCGGCTGACCCTGAGAGTCTCCATCGTTCTCACAATGTTATCTCTATTGGATGTTTGGGGTCAACTTGACATTTGTCATAACACTTGACTGCTTCAGAGGCTAAATCAGCTGAGTAGACCTGGGTCAAATACTTTTAAATACTGGGAAGTGTTTTCAGGGCTGGCAAACGGAAGTAGTGTACAGTAGGTATCAGTCATTCATGACTCCATTCCTACTCTTCATAGTGTACATGTGGTCTTCTAGGCTAAGATTGTGTCAGGCTCTGTTTTCCAGAGGCCGATGTGAACACACAAGTATGCTATATGATTAGACTCTGAACAACATTTTTGCACCTAGCCCACATGTAGCATACATGCCTTGAGCGTTGACACATCACAATAGAACGTACAGTGTCAGAGGGGTCCGTTAACTTTTCTCAAATACTATTGgtccattaccatgtcaatcaacgcttgaatagaaacgtagtttACACTCTGGATTTTGATGCCAATGCAGTCGCTTACAGTCCCATTCGTTTtcattgcagcctcgtttgaataCCACGGTTATGTATGTATAATGTGTACTAACACCGTTAAATAGCACGGTGGTCTTCTAGCATTAGTTGACTTGGGAGCACTTTTATACATTGTTTTCCTGGATTACTTTGATCATCACTTCCTCTCATGTTCTGCCTGCTGCGTTCTCTATAGTATGTTGCATAGCAAACAAAAGATGATTCACTGTGTGTGACAGTTTGAAAGACAACTGGAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128046 True 1510 lncRNA 0.55 1 10028035 10029544

Neighbor

gene id symbol gene type direction distance location
LOC110493963 LOC106606027 coding upstream 13672 10007058 ~ 10014363 (+)
LOC110507293 LOC106606028 coding upstream 44733 9847951 ~ 9983302 (+)
LOC110520749 LOC106606080 coding upstream 182416 9821130 ~ 9845619 (+)
LOC110520735 LOC106573422 coding upstream 242862 9758328 ~ 9785173 (+)
LOC110520763 pgcp coding downstream 6720 10036264 ~ 10074921 (+)
LOC110507402 LOC106595324 coding downstream 92901 10122445 ~ 10150796 (+)
LOC110520765 NA coding downstream 143020 10172564 ~ 10184239 (+)
LOC110507434 LOC106584755 coding downstream 156561 10186105 ~ 10189115 (+)
LOC118937668 LOC106584755 coding downstream 187725 10217269 ~ 10219572 (+)
G112179 NA non-coding upstream 5530 10022256 ~ 10022505 (+)
G112133 NA non-coding upstream 12108 10014839 ~ 10015927 (+)
G112171 NA non-coding upstream 31957 9995755 ~ 9996078 (+)
G112169 NA non-coding upstream 35865 9991850 ~ 9992170 (+)
G112200 NA non-coding downstream 56440 10085984 ~ 10090231 (+)
G112241 LOC106584755 non-coding downstream 154007 10183551 ~ 10296699 (+)
G112273 NA non-coding downstream 229308 10258852 ~ 10301455 (+)
G112556 NA non-coding downstream 300006 10329550 ~ 10329961 (+)
G112566 NA non-coding downstream 317152 10346696 ~ 10346984 (+)
LOC118937659 NA other upstream 251584 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 304164 9701990 ~ 9742723 (+)
G111788 NA other upstream 583994 9440309 ~ 9444041 (+)
G111453 NA other upstream 696419 9330269 ~ 9331616 (+)
LOC110535224 aif1 other upstream 799010 9221418 ~ 9229025 (+)
G112697 NA other downstream 781974 10811518 ~ 10826063 (+)
fbxo32 fbxo32 other downstream 1211188 11227497 ~ 11243074 (+)
elovl4a LOC106606161 other downstream 1232010 11260912 ~ 11275480 (+)
G113285 NA other downstream 1385387 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 1448432 11477976 ~ 11482741 (+)

Expression


Co-expression Network