G112200


Basic Information

Item Value
gene id G112200
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10085984 ~ 10090231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU128069
ctctcctctcatcagaccagactagtatagatgtctctcctctcaccagactattatagatgtctctcctctcatcagaccagactagtatagatgtctctcctctcaccagaccagactattatagatgtctctcctctcatcagaccagactagtatagatgtctctcctctcaccagaccagactagtatagatgtctctctcaccagaccagactagtatagatgtcagGGGGATATTAATCCATGTAGGAGATGGGGACAGATGTATTTATTTGTTCAGTCTGTATACGGTATGTGTTATCATCTTTACTTTGTTCAGTGTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128069 True 330 lncRNA 0.40 2 10085984 10090231

Neighbor

gene id symbol gene type direction distance location
LOC110520763 pgcp coding upstream 11063 10036264 ~ 10074921 (+)
LOC110507380 LOC106573899 coding upstream 50117 10020205 ~ 10035867 (+)
LOC110493963 LOC106606027 coding upstream 71621 10007058 ~ 10014363 (+)
LOC110507293 LOC106606028 coding upstream 102682 9847951 ~ 9983302 (+)
LOC110520749 LOC106606080 coding upstream 240365 9821130 ~ 9845619 (+)
LOC110507402 LOC106595324 coding downstream 32214 10122445 ~ 10150796 (+)
LOC110520765 NA coding downstream 82333 10172564 ~ 10184239 (+)
LOC110507434 LOC106584755 coding downstream 95874 10186105 ~ 10189115 (+)
LOC118937668 LOC106584755 coding downstream 127038 10217269 ~ 10219572 (+)
LOC110517641 LOC106584755 coding downstream 145509 10235740 ~ 10238379 (+)
G112180 NA non-coding upstream 56440 10028035 ~ 10029544 (+)
G112179 NA non-coding upstream 63479 10022256 ~ 10022505 (+)
G112133 NA non-coding upstream 70057 10014839 ~ 10015927 (+)
G112241 LOC106584755 non-coding downstream 93320 10183551 ~ 10296699 (+)
G112273 NA non-coding downstream 168621 10258852 ~ 10301455 (+)
G112556 NA non-coding downstream 239319 10329550 ~ 10329961 (+)
G112566 NA non-coding downstream 256465 10346696 ~ 10346984 (+)
G112585 NA non-coding downstream 275162 10365393 ~ 10365667 (+)
LOC118937659 NA other upstream 309533 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 362113 9701990 ~ 9742723 (+)
G111788 NA other upstream 641943 9440309 ~ 9444041 (+)
G111453 NA other upstream 754368 9330269 ~ 9331616 (+)
LOC110535224 aif1 other upstream 856959 9221418 ~ 9229025 (+)
G112697 NA other downstream 721287 10811518 ~ 10826063 (+)
fbxo32 fbxo32 other downstream 1150501 11227497 ~ 11243074 (+)
elovl4a LOC106606161 other downstream 1171323 11260912 ~ 11275480 (+)
G113285 NA other downstream 1324700 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 1387745 11477976 ~ 11482741 (+)

Expression


Co-expression Network