G112490


Basic Information

Item Value
gene id G112490
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10181054 ~ 10211523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU128421
gtctgcaggtcatggaagaactgggccatTTTCTGCTTCCAGctattgtgtacagatccttgcaacatgggactgtgcattatcatgctggaacaTGAGGTGaaggcggcggatgaatggcacgacaatgggcctcaagatcttgtcacggtatctctgtgcattaaaattgccaatGGTAAAACGTAAATGTGTTCACTGTCCatggcttatgcctgcccataccataaccccaccgccaccatgggacactctgatCACAATCAGCAAagcgctcgcccacacgacgccatacacgtggtctgtggttgtgaggccggttggacgtactgccaaattaaaataaaattatctggcaaccgctctggtggatattcctgcatggtccctcaaaacttgagacatcagtaatgtgtgacaaaattgcacattttagaggggctttttattgtccccagcacaaggtgtatctgtataatgatcatgctgtttaatcagcttcttgatatgccatacctgtcacaTGGATGGATTATCGtggtaaaggagaaatgatcaccaacagggatgtaaacacatttgtgcacaacattttagagaaatacgctttttgtgcatatggaacatttctgggatcttttatttcagctcatgaaacattggaccaacattTTATGTTACGTTTATATCGTTCTGTGTACAGTAGTTAGTTCACATGAAGATGTATGTAATTCATCTCTATTGACCAAAACAACTAAATCTGGACATTCTGGAGTCCTACTATGAC

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128421 True 787 lncRNA 0.43 2 10181054 10211523

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-2 NA coding downstream 82077 10098902 ~ 10098977 (-)
LOC110493960 LOC106606059 coding downstream 174244 10000730 ~ 10007883 (-)
LOC110507310 LOC106595913 coding downstream 267723 9910470 ~ 9913331 (-)
LOC118937662 NA coding downstream 334197 9846044 ~ 9847233 (-)
LOC110512181 LOC106605978 coding downstream 777561 9392946 ~ 9403493 (-)
LOC110507454 LOC106584706 coding upstream 50797 10262320 ~ 10267649 (-)
LOC110507471 LOC106584706 coding upstream 89182 10300705 ~ 10309293 (-)
LOC118944052 NA coding upstream 105255 10316778 ~ 10354245 (-)
LOC110520767 ulk4 coding upstream 190396 10400640 ~ 10611447 (-)
ccka cck-l coding upstream 503782 10715305 ~ 10718380 (-)
G112438 NA non-coding downstream 4857 10086449 ~ 10176197 (-)
G112481 NA non-coding downstream 21041 10159560 ~ 10160013 (-)
G112474 NA non-coding downstream 30272 10149736 ~ 10150782 (-)
G112471 NA non-coding downstream 34680 10145740 ~ 10146374 (-)
G112440 NA non-coding downstream 96307 10083108 ~ 10084747 (-)
G112492 NA non-coding upstream 24097 10235620 ~ 10294178 (-)
G112532 NA non-coding upstream 47356 10258879 ~ 10280539 (-)
G112557 NA non-coding upstream 118095 10329618 ~ 10329958 (-)
G112559 NA non-coding upstream 118569 10330092 ~ 10330324 (-)
G112586 NA non-coding upstream 153935 10365458 ~ 10365667 (-)
G112076 LOC105018850 other downstream 400599 9779011 ~ 9780455 (-)
G112066 NA other downstream 419389 9761300 ~ 9761665 (-)
G111955 NA other downstream 545924 9634537 ~ 9635130 (-)
G111855 NA other downstream 741116 9439362 ~ 9439938 (-)
G112491 LOC106584755 other upstream 6629 10184147 ~ 10296999 (-)
G112567 NA other upstream 134948 10346471 ~ 10346935 (-)
G112928 NA other upstream 358919 10570442 ~ 10570808 (-)
G112965 NA other upstream 436742 10648265 ~ 10718658 (-)
eif3h LOC100196680 other upstream 525206 10736729 ~ 10808244 (-)

Expression


Co-expression Network