G112491 (LOC106584755)


Basic Information

Item Value
gene id G112491
gene name LOC106584755
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10184147 ~ 10296999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU128436
cgatgttccaaacatattgctcactatatgtctgtgGCAGAGAGACTAGAAAGCATGAGAAAGTAATGGAAATTGTCCCCCCAAAATATGCTTTCTATTTCAAATGAAAatggagaacagtctatgaaggAAAATAAGAGTTTTGGTGCAGAGACAACCAACTAACACAAAAATAATAGTTTGATATTGTTGATGCGATACGACATGATATATTGTGgaaaataatatcccgatatgtaactatCCATTTTTTTCCCCTTCATTACTATTGGATAGGCGTTGCTGTTATAAATGTAGTTACTTATTGACACCATTGAGGTAGGGTTTGTTAAGATGACAGATTAGTTTATCGTAGCTTCTGGtcactactgtatgtattgtctTATCAAAAGGAATACAATGAAATATAGTGATTAAAGATCTGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAATGCAGTGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCAATTAATCAAAGATATAATTAATCCTTTATATCCCATATGAATCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGACCCAAGCTGACAGGACTGTTTGAATATTCCTATCTAATGGATGCTTCATGAGAATTTGAACTGAATGAATTTGAATGTTAAGAAATATTTTATTACTGCTTCAAGTGAGGAATCACCTCAAAAGTACTTCCAAAGTACTCAAAACATTCCAATTCAATCAGTGAAATTAAAGTGAAATAACAAACAGATAGTGAAATAAAAACTGTTCTGTCAGCGTCTGTCAAACATCCGTCCATCATATAAGGCCAGTTTCCTGGACCCAGATTAAGTTtactcctggactaaaaagcatTTTTTTCCCCTAATAAATAGGAGTTACTGTTTCCAGTGCTGTTCCCAGAGTACTGTTTCCAGCCCCTTCCATGTCCACAAATCCCCAGTGGGCTCCGATGGAGGTGATTCCAGCACCGTTGAAGCGACCGCTGAGGATCCTCAGCTCATTGCCCATGTTGGATGGGTAGAAGTTGAAGGAGACCTGTTTCCAGCCCCTTCCATGTCCACCAATCCCCAGTGGGCTCCGATGGAGGTGATGCCGGCACCGTTGAAGCGACCGCT
>TU128431
cgatgttccaaacatattgctcactatatgtctgtgGCAGAGAGACTAGAAAGCATGAGAAAGTAATGGAAATTGTCCCCCCAAAATATGCTTTCTATTTCAAATGAAAatggagaacagtctatgaaggAAAATAAGAGTTTTGGTGCAGAGACAACCAACTAACACAAAAATAATAGTTTGATATTGTTGATGCGATACGACATGATATATTGTGgaaaataatatcccgatatgtaactatCCATTTTTTTCCCCTTCATTACTATTGGATAGGCGTTGCTGTTATAAATGTAGTTACTTATTGACACCATTGAGGTAGGGTTTGTTAAGATGACAGATTAGTTTATCGTAGCTTCTGGtcactactgtatgtattgtctTATCAAAAGGAATACAATGAAATATAGTGATTAAAGATCTGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAATGCAGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCAATTAATCAAAGATATAATTAATCCTTTATATCCCATATGAATCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGACCCAAGCTGACAGGACTGTTTGAATATTCCTATCTAATGGATGCTTCATGAGAATTTGAACTGAATGAATTTGAATGTTAAGAAATATTTTATTACTGCTTCAAGTGAGGAATCACCTCAAAAGTACTTCCAAAGTACTCAAAACATTCCAATTCAATCAGTGAAATTAAAGTGAAATAACAAACAGATAGTGAAATAAAAACTGTTCTGTCAGCGTCTGTCAAACATCCGTCCATCATATAAGGCCAGTTTCCTGGACCCAGATTAAGTTtactcctggactaaaaagcatTTTTTCCCCTAATAAATAGGAGTTACTGTTTCCAGTGCTGTTCCCAGAGTACTGTTTCCAGCCCCTTCCATGTCCACAAATCCCCAGTGGGCTCCGATGGAGGTGATCCCGGCACCGTTGAAGGAGACCTGGTTGGGCATGCCGGCTGACAGAGTGCGCCCCATGTTGGTGGTTAACACCAGGTAGCAGATGTAGTCTGCTGGGTTGTACTTCCCAGACACCTCAACGATGGCCTCATCATTAAACAGCTCAATCTCCTGCTTTAAGCCCCCTTCACCACCAAACACAGGAGACCAGTTGCTACCGTATCTGAGCTGCAACCTAAAACAGAGGAAGCTTTTCAAGTTGGTTGTGTTTTGATAAGGCACATTCAGA
>TU128434
TAATTTAAAGATATGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAAAGCAGAGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCCATTAATCAAAGATAGAATTAATCCTTTAAATCCCATATGATTCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGATCCAAGCTGACAGGACTGTTTGAATATTCCTATCTAATGGATGCTTCATGAGAATTTGAACTGAATGAATTTGAATGTTAAGAAATATTTTATTACTGCTTCAAGTGAGGAATCACCTCAAAAGTACTTCCAAAGTACTCAAAACATTCAAATTCAATCAgtgaaataaaagtgaaataacaaACAGATAGTGAAATAAAAACTGTTCTGTCAGCGTCTATGTCAAACATCCGTCCATCATATAAGGTCAATTTCCTGGACCCAGATTAAGTTtactcctggactaaaaagcattttTCCCCCTAAAAAATAGGAGTTACTGTTTCCAGTGCTGTTCCCAGAGTACTGTTTCCAGCCCCTTCCATGTCCACAAATCCCCAGTGGGCTCCGATGGAGGTGATTCCAACACCGTTGAAGCGACCGCTGAGGATCCTCAGCTCATTGCCCATGTTGGATGGGTAGAAGTTGAAGGAGACCTGGTTGGGCATGCCGGCTGACAGAGTGCGCCCCATGTTGGTGGTTAACACCAGGTAGCAGATGTAGTCTGCTGGGTTGTACTTCCCAGACACCTCGACAATGGCCTCATCATTAAACAGCTCCATCACCTGCTTTACACTCCCTTCGTTACCGAACACAGGAGACCAGGTGTTGCCGAGACCTGGTTGGGCATGCCGGCTGACAGAGTGCGCCCCATGTTGGTGGTTAACACCAGGTAGCAGATGTAGTCTGCTGGGTTGTACTTCCCAGACACCTCAACGATGGCCTCATCATTAAACAGCTCAATCTCCTGCTTTAAGCCCCCTTCACCACCAAACACAGGAGACCAGTTGCTACCGTATCTGAGCTGCAACCTAAAACAGAGGAAGCTTTTCAAGTTGGTTGTGTTTTGATAAGGCACATTCAGA
>TU128427
TATTGTAGCTTCTGGtcactactgtatgtattgtctTATTAAAAGGAATACAATGAAATATAATGATTAAAGATATGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAAAGCAGAGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCCATTAATCAAAGATATAATTAATCCTTTAAATCCCATATGCATCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGACCCAAGCTGACAGGACTGTTTGAATATTCCTATCTGATGGACGCTGACAGAACTGTTTTTTATTTCACTATCTG
>TU128425
cgatgttccaaacatattgctcactatatgtctgtgGCAGAGAGACTAGAAAGCATGAGAAAGTAATGGAAATTGTCCCCCCAAAATATGCTTTCTATTTCAAATGAAAatggagaacagtctatgaaggAAAATAAGAGTTTTGGTGCAGAGACAACCAACTAACACAAAAATAATAGTTTGATATTGTTGATGCGATACGACATGATATATTGTGgaaaataatatcccgatatgtaactatCCATTTTTTTCCCCTTCATTACTATTGGATAGGCGTTGCTGTTATAAATGTAGTTACTTATTGACACCATTGAGGTAGGGTTTGTTAAGATGACAGATTAGTTTATCGTAGCTTCTGGtcactactgtatgtattgtctTATCAAAAGGAATACAATGAAATATAGTGATTAAAGATCTGCTTTTTATTAAAATGTCCAGAAGCAGATGTAGCAGAAAAGGATCAACAAATAACAAATGCAGTGTGTATAAAATAGTGAAGGTGAAACACCCTGAAACACTATTATCTCCCCATAATATTTGATTGTTCAATTAATCAAAGATATAATTAATCCTTTATATCCCATATGAATCTTTCCTTTATTGTGATAAAATGTGATAACAACGCATGTTGACCCAAGCTGACAGGACTGTTTGAATATTCCTATCTAATGGATGCTTCATGAGAATTTGAACTGAATGAATTTGAATGTTAAGAAATATTTTATTACTGCTTCAAGTGAGGAATCACCTCAAAAGTACTTCCAAAGTACTCAAAACATTCCAATTCAATCAGTGAAATTAAAGTGAAATAACAAACAGATAGTGAAATAAAAACTGTTCTGTCAGCGTCTGTCAAACATCCGTCCATCATATAAGGCCAGTTTCCTGGACCCAGATTAAGTTtactcctggactaaaaagcatgttgaatggagaatctccattgaaagtaACTAGTCCAGGATTAGGCTTAATCTGTATCTGGGATACCATCCCAAAGAGCAAGACATACTTTTTTCCCCTAATAAATAGGAGTTACTGTTTCCAGTGCTGTTCCCAGAGTACTGTTTCCAGCCCCTTCCATGTCCACAAATCCCCAGTGGGCTCCGATGGAGGTGATTCCAGCACCGTTGAAGCGACCGCTGAGGATCCTCAGCTCATTGCCCATGTTGGATGGGTAGAAGTTGAAGGAGACCTGGTTGGGCAGGCCGGCTGACAGAGTGCGCCCCATGTTGGTGGTTAACACCAGGTAGCAGATGTAGTCTGCTGGGTTGTACTTCCCAGACACCTCAACGATGGCCTCATCATTAAACAGCTCCATCTCCTGCTTTTCACTCCCTTCGTTACCGAACACAGGAGACCAGGTAGCAGATGTAGTCTGCTGGGTTGTACTTCCCAGACACCTCGACAATGGCCTCATCATTAAACAGCTCCATCACCTGCTTTACACTCCCTTCGTTACCGAACACAGGAGACCAGGTGTTGCCGTATCTCAGCTGGAACCTAAAACAGAGGAAGCTTTTCACGTTGGTTGTGTTTTGATAAGGCACATTCAGACCGAGACAGCAGGTAGCGTCAGAGAAAATCAAGGAATTACATTTTACATTGTACTCTGGGTTAGATACGATAACAATATTGTTTGGTCATAAACTGAATATGTAATAaacacaaagaaagaaagaaagagtgtaTGTTGGGTAGTGTAGTTGGACTGAGTCAGTGGTGTTTGTTGGGTAGTGTAGTTAGACTGAGTCAGTGGTGTCTGTTCATGGGTCAGAGTCTGCTCACCCGCTGATGTAATTGTTGctgttgtagttgtagtagtagtagtagtagtagtagttgttgttggtCTCCCACACTCTGACCGCTGTGATGCGCCCCTCACCGTAGGAAGCAAATGGGGTGCCACCTCCCTGACCCACCGCAGAGGAATACGAGTACGGGTCTTTGATGGCTAAAATAACATGGCCAATATGTTTACTATATTTACTATATTAAtaatacatatttatatatatatcatttt

Function

NR:

description
zymogen granule membrane protein 16-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128436 False 1193 lncRNA 0.38 5 10184147 10296999
TU128431 False 1303 lncRNA 0.38 5 10187982 10296999
TU128434 False 1134 lncRNA 0.42 2 10187982 10219575
TU128427 False 365 lncRNA 0.38 2 10188811 10238442
TU128425 True 2035 TUCP 0.40 3 10218152 10296999

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-2 NA coding downstream 85170 10098902 ~ 10098977 (-)
LOC110493960 LOC106606059 coding downstream 177337 10000730 ~ 10007883 (-)
LOC110507310 LOC106595913 coding downstream 270816 9910470 ~ 9913331 (-)
LOC118937662 NA coding downstream 337290 9846044 ~ 9847233 (-)
LOC110512181 LOC106605978 coding downstream 780654 9392946 ~ 9403493 (-)
LOC110507471 LOC106584706 coding upstream 3706 10300705 ~ 10309293 (-)
LOC118944052 NA coding upstream 19779 10316778 ~ 10354245 (-)
LOC110520767 ulk4 coding upstream 104920 10400640 ~ 10611447 (-)
ccka cck-l coding upstream 418306 10715305 ~ 10718380 (-)
eif3h LOC100196680 coding upstream 439745 10736729 ~ 10808244 (-)
G112438 NA non-coding downstream 7950 10086449 ~ 10176197 (-)
G112481 NA non-coding downstream 24134 10159560 ~ 10160013 (-)
G112474 NA non-coding downstream 33365 10149736 ~ 10150782 (-)
G112471 NA non-coding downstream 37773 10145740 ~ 10146374 (-)
G112440 NA non-coding downstream 99400 10083108 ~ 10084747 (-)
G112557 NA non-coding upstream 32619 10329618 ~ 10329958 (-)
G112559 NA non-coding upstream 33093 10330092 ~ 10330324 (-)
G112586 NA non-coding upstream 68459 10365458 ~ 10365667 (-)
G112875 NA non-coding upstream 94959 10391958 ~ 10392200 (-)
G112876 NA non-coding upstream 95280 10392279 ~ 10392498 (-)
G112076 LOC105018850 other downstream 403692 9779011 ~ 9780455 (-)
G112066 NA other downstream 422482 9761300 ~ 9761665 (-)
G111955 NA other downstream 549017 9634537 ~ 9635130 (-)
G111855 NA other downstream 744209 9439362 ~ 9439938 (-)
G112567 NA other upstream 49472 10346471 ~ 10346935 (-)
G112928 NA other upstream 273443 10570442 ~ 10570808 (-)
G112965 NA other upstream 351266 10648265 ~ 10718658 (-)
G113096 NA other upstream 724042 11021041 ~ 11021734 (-)
G112490 NA non-coding downstream 6629 10181054 ~ 10211523 (-)

Expression


Co-expression Network