G112724


Basic Information

Item Value
gene id G112724
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10657498 ~ 10803291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU128710
GTTTTATTCAGcatttcactgtaaggtctactacaccagttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacatctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactctaaggtctaccacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgctgtattcagcatttcacggtaaggtacctgttgtattcagcatttcacggtaaggtacctgttgtattcagcatttcacggtaaggtacctgttgtattcagcatttcacggtaaggtacctgttgtattcagcatttcacagtaaggtttgACTTGATGAATgtcgtactgtatatctgttcaTTGTCACTCAAAAACAATTCTAATTTAGTAGAATAAACGACAACGTTAC
>TU128706
agcatttcactgtaaggtctactacaccagttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacatctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtgaactacctacacctgttgtattcagcatttcactgtaaggtctactacaccagttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtaatcagcatttcactgtaaggtctactacatctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttatattcagcatttctactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtagtcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactctaaggtctaccacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgctgtattcagcatttcacggtaaggtacctgttgtattcagcatttcacggtaaggtacctgttgtattcagcatttcacggtaaggtacctgttgtattcagcatttcacggtaaggtacctgttgtattcagcatttcacagtaaggtttgACTTGATGAATgtcgtactgtatatctgttcaTTGTCACTCAAAAACAATTCTAATTTAGTAGAATAAACGACAACGTTAC
>TU128708
ctatactggtaccccccctgtatatagtctctatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgactacaacaggtgtagtagaccttacagtgaaatgcagaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtaggtagttcaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttccagtgaaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128710 False 995 lncRNA 0.39 4 10657498 10754370
TU128706 False 1371 lncRNA 0.49 2 10752900 10754370
TU128708 True 488 lncRNA 0.41 3 10802690 10803291

Neighbor

gene id symbol gene type direction distance location
LOC110535244 ctnnb1 coding upstream 254853 10366101 ~ 10402645 (+)
LOC110507415 LOC106584755 coding upstream 360906 10293799 ~ 10296592 (+)
LOC110517641 LOC106584755 coding upstream 419119 10235740 ~ 10238379 (+)
LOC118937668 LOC106584755 coding upstream 437926 10217269 ~ 10219572 (+)
LOC110507434 LOC106584755 coding upstream 468383 10186105 ~ 10189115 (+)
washc5 kiaa0196 coding downstream 228701 11031992 ~ 11083098 (+)
nsmce2 LOC106606151 coding downstream 281070 11084361 ~ 11097464 (+)
LOC110512016 LOC106564714 coding downstream 399596 11202887 ~ 11211212 (+)
fbxo32 fbxo32 coding downstream 424206 11227497 ~ 11243074 (+)
elovl4a LOC106606161 coding downstream 457621 11260912 ~ 11275480 (+)
G112719 NA non-coding upstream 9411 10647833 ~ 10648087 (+)
G112704 NA non-coding upstream 28378 10628891 ~ 10629120 (+)
G112694 NA non-coding upstream 38964 10618191 ~ 10618534 (+)
G112687 NA non-coding upstream 49125 10607967 ~ 10608373 (+)
G112677 NA non-coding upstream 62886 10594319 ~ 10594612 (+)
G112784 NA non-coding downstream 7196 10810487 ~ 10810791 (+)
G112697 NA non-coding downstream 8227 10811518 ~ 10826063 (+)
G112788 NA non-coding downstream 23187 10826478 ~ 10827075 (+)
G112791 NA non-coding downstream 27173 10830464 ~ 10830663 (+)
G112793 NA non-coding downstream 30294 10833585 ~ 10833786 (+)
LOC118937659 NA other upstream 881047 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 933627 9701990 ~ 9742723 (+)
G111788 NA other upstream 1213457 9440309 ~ 9444041 (+)
G111453 NA other upstream 1325882 9330269 ~ 9331616 (+)
LOC110535224 aif1 other upstream 1428473 9221418 ~ 9229025 (+)
G113285 NA other downstream 611640 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 674685 11477976 ~ 11482741 (+)

Expression


Co-expression Network