G112697


Basic Information

Item Value
gene id G112697
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10811518 ~ 10826063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU128663
TAATTAAAACACTTTTATTTCAAATTCTTTACAGAAGTATCACAACAGCTAGTTAACCATAAGACTTAAAAACATGGGATCGTCAACTTTCATTGAAACATGTCTAGTTTCtttatgcaacaacaacaacaatagctGTGGAGGTACAAAACGCAACGGGAATAAATGGGCATTATTATACACCTAAACAATACAATTCAATGCTAGTCGTAATATAGCCAATTTATCaacagaaataacaaaaaaagatgatttttttttttttaaagaaaaccaGGATTTTATGTCAAGTGCAATGAGGAAGAAGTCGAGGTGAAGAGCACTTATTCCATTTCTCTCATGATATAACAGTGCCTGTAAACAGCATGTATGTAAGCATAAAAGACTAAATGTTCTTAcaccattttttttggggggggggggggattcttgATTGGAGACTAAAATTTGATGAATCTTTTGATGAATTTGACCGTTACAGAGCAGTGGGACATGTATTGTTCCaacaccctccccctcccccccaccccaaaacaaACAACTAGTGTGGTCGGAAAGCTTTACAAaatgaagagaaaaaaaaaggaaCTTGACAGGAAATATAAATATACTGGATAAATGCATTTCTCACTTAAAAAAACACAATACTGCATGATTCAGTTGGTGGTAGATACAGTACAATCCTTTTCAAAGTTAGCATTTAGGACaccccccccaacaaaaaaaaatgcaaaaaaaaaacctaAAACATACATAAAAATAGTGAAAAAGAcatttccaaatggcaccatattccctatatagtgcactacttttgcccagaaCCCTAggaggctctggtcaaaagtagggcgcTGTATAGGAACCAGTGCCATTTGGACCTCGGGCAGTGTCTAAACCAGGTGGAATCTTGGTCCGGCTGTAGCGATGATGTCACTGTAAGGCTCGGTCTGGTTGAGCTCGATGGCCTGCTGTTTCTTCAGGACCAGGAAACTGTAGAACTTGGCGGCCGCCTGCTTCTTGTTGTTGTCTCGGCACAGCTCCAACAAGCTGACCTGCTCGGCTCCCGTCTTGGCCATGACTcgCTGAAGGCCATGCAGCATCTGCTGGGTCCTCTTGttccacctcttctcctcctggTCCTGAGTTGgatcaccctcctcctcCTCCTCATCACTGTCATCCTTGTCCTTCTTCTCCTTGTCCAGCAGGTCCAGCTCAGGCACCAGCTGTGTGAGGTTGAGGCTCTCCTCTGGGGGCAGGTCTACCTGGGCCATGGAGAGGACCGACTGATCAGCCTGAGCTAACGAGAGGACTGAGAGATCAGCCTGAGGCTCCTGGGCTCCCATAGGCAGGCCAGCCTCCTTGTGTTTGAGTCCGTGTGGGGTGGACGGTGGTGGCATGACAGTCTCATCCAGGGTGGTCCTACTCCCCTCCATGGCTGAGGCCTGCAGCATACTGGGTTCCTCCATGATGGTctggtCAATAACGTCCCTGCCAGACAGAGCCTCCTCTCTGGGCACCTCGGGGTTCTCCAGGTCCTTCAGGAACTCATCCAGACTATcagcctctcctcccttcctcctcttcctcatctcatCGGGCACCAGAGGAGTCAGGCAGCGCGTGAACATcTTCAGCAGTTTGCTGTTCCAGAGCGGCTGTGCggggagagagaagagtttcTCCACTCCTCCGGTCTCTTTCCACATCATCAGCTTCTTGGTGGGAGGGGCCAGGTCCAACGTGGTCACGATGTCCGAGTAGTCGCTGAGCTGGGCGCGGATCGACTTACTGTCCAGCTCCTTCAGGTTGTCGACAATcagcttcctcttcctcttcgccTTGGTCTCTTTCACAGTGATGTCGATGGGCTCCAAGGCAAAAGCCTCTTCCTCATTGTGGACCAGAGTGGTCTGTTCCGTCTGGTCCTGCATGGCCGGCAGGGGCTCGACTGGGCCGGAGTCGGGACTGTCTGGACCCGGTGACTGTAGGTTGTCGAAGTCGTCCTCATCGTCTCCATGGTCTGGGGGAATCACGCTCTCTGTGATGGCTGGAGGGTCGTCAAATATACCACCCCCATCCTCCTGGGACAGTAGTTTATCCACCAGCATTCCTCCTTCGTTGTTCTCCATGGTGTCTCCAAAGTCGTCGTACTCCAGGTGGTTGGACTTGTCCGGCAGGTGAGCAGGCCCAGGCTCTGCCTCCAGCAGCAGATTGGAGGCTGTCGCTCCATGGATGATGTCCTCTTCAAAGCCTCCCTCTACCCTCATCATCTCACGGTCATCCATGCCAAAGTCAGCAAAGTCATTGTCCTGCATGAGGCTGAGGTTCCCCACCTCCTCCCTCATGGTGATCTCCTCCACTCTGCTCTGGTTCAGGGTGAACTGCTGGGCGACGTCTATGTCGTCAAGGTCAGGTAAGGGTTGGTCAAAGTCGTGGAAATCCTCCGGCAGGGTGATAGCGTTGTAGGCagcctctctgttctcctctggcaGATCCACCACACCTGGTCTGAAAGCCATCTTGATCTTGATGAAGGCTTCATTACAGTCAGCCAGGAGGTACTTGGCCTTCCTGTTGTAGATCCTCACCACACCGAGCAGGAGGTGACCTGAGGTCCTCAGCGCCATCTTCACCTTGGGGCAGATAATGCTCTCCACACTGCTCTCTAGGTTACATTCAAACACATGAGCCTTGGTCAGCTTCTTGTCCCAGTGGGCCGCTAGCCAGATCTTGGCCAGAGGCCCACGTTTGGACAGGACAAAGTGGGCGTAGAACATTGCCCCGGTTGGTTGCTAGCTCTTGAAGAACCGGGGGTCAGAGCACCGATTGTACCCCCCCTTTCAAAATAAATATCAATGATTATGCAATTACTCCCAGCGATTGTCTCTTCCTGTTGTACTCATGAAAAGAGTCAAGATGGCGCCAGTAGACTTCCTCCCGCTCAGTGTCCTTTTAAAATCAGCAGGATGTTTACAGCCCGAAACATGGCGAAGGGAGGAGTCTGCTCGTGTTGACAGCCAGCTGCAAATGGCAAATGCATTGACCAATGATAGC
>TU128665
TAATTAAAACACTTTTATTTCAAATTCTTTACAGAAGTATCACAACAGCTAGTTAACCATAAGACTTAAAAACATGGGATCGTCAACTTTCATTGAAACATGTCTAGTTTCtttatgcaacaacaacaacaatagctGTGGAGGTACAAAACGCAACGGGAATAAATGGGCATTATTATACACCTAAACAATACAATTCAATGCTAGTCGTAATATAGCCAATTTATCaacagaaataacaaaaaaagatgatttttttttttttaaagaaaaccaGGATTTTATGTCAAGTGCAATGAGGAAGAAGTCGAGGTGAAGAGCACTTATTCCATTTCTCTCATGATATAACAGTGCCTGTAAACAGCATGTATGTAAGCATAAAAGACTAAATGTTCTTAcaccattttttttggggggggggggggattcttgATTGGAGACTAAAATTTGATGAATCTTTTGATGAATTTGACCGTTACAGAGCAGTGGGACATGTATTGTTCCaacaccctccccctcccccccaccccaaaacaaACAACTAGTGTGGTCGaaaaaaaggaaCTTGACAGGAAATATAAATATACTGGATAAATGCATTTCTCACTTAAAAAAACACAATACTGCATGATTCAGTTGGTGGTAGATACAGTACAATCCTTTTCAAAGTTAGCATTTAGGACaccccccccaacaaaaaaaaatgcaaaaaaaaaacctaAAACATACATAAAAATAGTGAAAAAGAcatttccaaatggcaccatattccctatatagtgcactacttttgcccagaaCCCTAggaggctctggtcaaaagtagggcgcTGTATAGGAACCAGTGCCATTTGGACCTCGGGCAGTGTCTAAACCAGGTGGAATCTTGGTCCGGCTGTAGCGATGATGTCACTGTAAGGCTCGGTCTGGTTGAGCTCGATGGCCTGCTGTTTCTTCAGGACCAGGAAACTGTAGAACTTGGCGGCCGCCTGCTTCTTGTTGTTGTCTCGGCACAGCTCCAACAAGCTGACCTGCTCGGCTCCCGTCTTGGC

Function

NR:

description
Double-strand-break repair protein rad21 homolog

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU128663 False 3060 TUCP 0.41 14 10811518 10826063
TU128665 True 1052 lncRNA 0.50 2 10811518 10812593

Neighbor

gene id symbol gene type direction distance location
LOC110507508 LOC106605488 coding upstream 101158 10626586 ~ 10710360 (+)
LOC110535244 ctnnb1 coding upstream 408873 10366101 ~ 10402645 (+)
LOC110507415 LOC106584755 coding upstream 514926 10293799 ~ 10296592 (+)
LOC110517641 LOC106584755 coding upstream 573139 10235740 ~ 10238379 (+)
LOC118937668 LOC106584755 coding upstream 591946 10217269 ~ 10219572 (+)
washc5 kiaa0196 coding downstream 219399 11031992 ~ 11083098 (+)
nsmce2 LOC106606151 coding downstream 271768 11084361 ~ 11097464 (+)
LOC110512016 LOC106564714 coding downstream 390294 11202887 ~ 11211212 (+)
fbxo32 fbxo32 coding downstream 414904 11227497 ~ 11243074 (+)
elovl4a LOC106606161 coding downstream 448319 11260912 ~ 11275480 (+)
G112784 NA non-coding upstream 727 10810487 ~ 10810791 (+)
G112699 LOC100196680 non-coding upstream 3269 10736609 ~ 10808249 (+)
G112724 NA non-coding upstream 8227 10657498 ~ 10803291 (+)
G112770 NA non-coding upstream 36146 10774839 ~ 10775372 (+)
G112751 NA non-coding upstream 72478 10737776 ~ 10739040 (+)
G112788 NA non-coding downstream 13885 10826478 ~ 10827075 (+)
G112791 NA non-coding downstream 17871 10830464 ~ 10830663 (+)
G112793 NA non-coding downstream 20992 10833585 ~ 10833786 (+)
G112794 NA non-coding downstream 25067 10837660 ~ 10839399 (+)
G112796 NA non-coding downstream 27606 10840199 ~ 10841233 (+)
LOC118937659 NA other upstream 1035067 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 1087647 9701990 ~ 9742723 (+)
G111788 NA other upstream 1367477 9440309 ~ 9444041 (+)
G111453 NA other upstream 1479902 9330269 ~ 9331616 (+)
LOC110535224 aif1 other upstream 1582493 9221418 ~ 9229025 (+)
G113285 NA other downstream 602338 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 665383 11477976 ~ 11482741 (+)
G113396 NA other downstream 896010 11708603 ~ 11709777 (+)

Expression


Co-expression Network