G112794


Basic Information

Item Value
gene id G112794
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 10837660 ~ 10839399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU128804
gtttctattggAATGTTAATCTCTATAAAATGATGTGTGTAAATGaccagggtggaggaagagaacaGGCAGGAAGAAGAGTGTCTgaattagcctggtcccagatcagtttgtgctgcgCTACAACGATCATaacaggagttggcaagacactacagacagatctgggaccagactgtGACTGAACCGACAGAGGCTCCGTAATGTTCCAGCGAAACACAGACAGGAACCTGTCTGCTACAGATCAGATGGAGTCACGTCCCAGTGTTTAGACAATAAGGTCACCTAAACAACCAGCTACTGTAGCAGTCAGTGTTACTGGGGACACAGAGAGATCTTCACTAAAATGGGAACTCCTCTGTTAAAAAGGCAACAATACAATCATTCTGAAGTGGCTTTCTTTAAAAAGGCACATTCATTTTCATCCTAGAACAGCAACAGGGGAATCAgaggcttgcatcccaaatgtcaccccattccctttatagtgcactacctttgaccagggcccatagggaatagggtgccatttgaccaggacacatagggaatagggtgccatttgaccaggacacatagggaatagggcccatagggaatagggtgccatttgaccagggcacatagggaatagggtgccatttgactagggcccatagggaatagggtgccatttgactagggcccatagggaatagggcccatagggaatagggtgccatttgactagggcccatagggaatagggtgccatttgactagggcccatagggaatagggtgccatttgaccagggcccatagggaatagggggccatttgaccagggcccatagggaatagggggacatttgggacacaacccagaATGAGAACAGGATCAGAGAGAGATTAGATTTAATCTCAAACACATATTGCGCCATGAGAATTAACCCATAgggttctgacacacacacacacacacacacacacacaccatgtgttTCTATTAATGCTGAGATATCTCATCTGTTGTCTGTCACGAGGcccactagctctggtccagggtgttagtgcAGCCTGTTCAGGAGGCTCAGTGTTAGAGAGCAGCACtaatgccctggaccagagctaggggCTACATCCTGGACTGTACAGTCACAcctcacacagtcacacctcaCACAGTCACACTACACAGTCACACTACAGTCACACCACACAGTCACACTACAGTCACACTACACAGTCAcacctcacacagacacactacacattcacacaacacagtcacacctcacacagtcacaccacacacagtcacactacAGTCACACACTACACAGTCACACTACACAGTCACACTACACACCATATAATCACACAGCCCTCACCTACAGTCGCACAGCCCTCACCTACAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTACAGTCACACAGCCCTCACCTAGTCACACAGCCCTCACCTAGTCACACAGCCCTCACCTAGTCACACAGCCTTCACCTAAAAATGGAAAGGGGGACTTTTCTCTTATCAAAACAAGGGGACATTCTAGGGATGTGAAATCATTGAACATTAAAACATTGAACTGTTGGCACAATAATATAAATGTCATATTAATAATGAATCTATATAGATGTACACCGCT

Function

NR:

description
extensin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128804 True 1740 lncRNA 0.48 1 10837660 10839399

Neighbor

gene id symbol gene type direction distance location
LOC110507508 LOC106605488 coding upstream 127300 10626586 ~ 10710360 (+)
LOC110535244 ctnnb1 coding upstream 435015 10366101 ~ 10402645 (+)
LOC110507415 LOC106584755 coding upstream 541068 10293799 ~ 10296592 (+)
LOC110517641 LOC106584755 coding upstream 599281 10235740 ~ 10238379 (+)
LOC118937668 LOC106584755 coding upstream 618088 10217269 ~ 10219572 (+)
washc5 kiaa0196 coding downstream 192593 11031992 ~ 11083098 (+)
nsmce2 LOC106606151 coding downstream 244962 11084361 ~ 11097464 (+)
LOC110512016 LOC106564714 coding downstream 363488 11202887 ~ 11211212 (+)
fbxo32 fbxo32 coding downstream 388098 11227497 ~ 11243074 (+)
elovl4a LOC106606161 coding downstream 421513 11260912 ~ 11275480 (+)
G112793 NA non-coding upstream 3874 10833585 ~ 10833786 (+)
G112791 NA non-coding upstream 6997 10830464 ~ 10830663 (+)
G112788 NA non-coding upstream 10585 10826478 ~ 10827075 (+)
G112697 NA non-coding upstream 25067 10811518 ~ 10826063 (+)
G112784 NA non-coding upstream 26869 10810487 ~ 10810791 (+)
G112796 NA non-coding downstream 800 10840199 ~ 10841233 (+)
G112797 NA non-coding downstream 7334 10846733 ~ 10847395 (+)
G112814 NA non-coding downstream 26995 10866394 ~ 10872761 (+)
G112815 NA non-coding downstream 27620 10867019 ~ 10872179 (+)
G112843 NA non-coding downstream 103720 10943119 ~ 10944198 (+)
LOC118937659 NA other upstream 1061209 9773574 ~ 9776807 (+)
LOC110506952 LOC106606100 other upstream 1113789 9701990 ~ 9742723 (+)
G111788 NA other upstream 1393619 9440309 ~ 9444041 (+)
G111453 NA other upstream 1506044 9330269 ~ 9331616 (+)
G113285 NA other downstream 575532 11414931 ~ 11415178 (+)
G113313 LOC102781083 other downstream 638577 11477976 ~ 11482741 (+)
G113396 NA other downstream 869204 11708603 ~ 11709777 (+)

Expression


Co-expression Network