XLOC_020905 (si:dkey-253d23.5)


Basic Information

Item Value
gene id XLOC_020905
gene name si:dkey-253d23.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9886903 ~ 9890386 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041144
ATGAGTGATTCAGGATCCTGCACAATAAAACAGGAAGATACTGAAGAACAAATAGaCTTGTTAAATGAGAAGACGGAGATTGAAGATCTGATTAAAAGGGGAGAGAAACATCAAATCAAAACAGAAGAACACCTTCACAGTATTTCATCAATAAGGAAAGACAACACATGTTTCACATGCCTTCAGAGTGCAAAGACTTTCTCATGCAAGGAAAGTCTGAATCTTCACATGAAAATCCATAAAGAGGTGAAGCCACACACATCTGATCAACATGAGAAGATTTCCACAGGAGAAGTTAAAGATAACATGAAAGTCCACGCTGAGGAAACGGTGTACAATTGTGATCAGTGTGACAGGATTTTCACAGATAAGAGAAATTTAGCCGCACACATGAAATTTCACAGCGGAGAGAAGCCCTTCATGTGTGATTTATGTGGGAGGAGTTTTCTTTatgcaaatacattaaaaaaacacagaaatttaCACAGCGCTGTGAAGAATCACGTCTGCTCCAAGTGTGGCAAGAGCTTTTTCACATATAGTTCGTTAAAAATCCACCACACAGCTCACGCTACAGAAAAACCTTTCAAATGTTCACACTGTGGCAAGGGGTTCAAATCATTACAGTGTCAACGAATACATGAGATGATCCACAGTGGAGAAAAGCCACACAAGTGCGATCAGTGCGAGAAGACTTTCAGACAGAGAAAAAGTTTACATttacacatgagaatccacactggagagaagccgtacacGTGCGAtcattgtgggaggagtttcagcaGAAAGGAAACCCTTAACAGTCACTTGAAAACCCACTCTGGGAATATGCTGTACACTTGTGCTGAGTGTGGGGAGGGTTTCAACAATACAGGAGATTTTACAGCACACATGAAAACTCACTTTGGAGAGAACCCTTTCTTATGTGATCAATGTGGGAAGGGTTTTCCTAATAGGactgcattaaaaaaacatcagaaTATACACAAAGGTTTGAAGGATCATGTTTGCTCCAAGTGTGGCAAGACTTTTTTGacaaatgctattttaaaagcgCATGAAAGACTTCACACTACAGAAACGCCTTATAaatgttcacactgtgacaaggcATTTAAGTTATCGCAGTATTTGAAAATACAcgagaagatccacactggagaaaagccgtaCTCCTGTGATccatgtgggaagagtttcagacaaaAACGAGATCTAGATGTACACATTGAAAAACACACTGAAGAGAAGCCACACAAATGTGATCAGTGCGGGGCGGGTTTTGCCAGGAAGTTAAGTCTTGCTAATCACAagaagatccacaccggagagaacacatgtgatcagtgtgggatGAGTTTTGCCAAAAAAGAAAGTCTTGCTAATCACATAAaaatccacaccggagagaagccgttcaAATGTGATCGCTGCGAGGCGAGTTTTGCCAGAAAGCAAAGCCTTGTTAATCACGTGaaaattcacaccggagagaatcTGTACAAATGTgatcagtgtgggaaaagtttcagaAGATATAGTGTTTTTAAGGATCATCTGCTGACTCATTCTAGAAAACGAATCTATAAATGCGACCAGTGCGAAAAAAGCTTTTTTCGGCCAAGTTTTCTGAGGGACCACCGAAAAATTCATACAGATGAGAGGCCATACGTGTGTTATTTGTGTGGGAGGAGTTTTCGTTATACGAGTGGATTAAAATCACACCAGAAAAGGCACGGCGGTGTGAAGGATCATGCTTGCTCTGAGTGTGGGAAGACTTTCTTTTCAGTTAGTGCTCTAAAATGTCACCAGTCAGTTCACACTACAGAAACGCCTTATAAATGTTCgtactgcgacaagagattcaaaCGGTTACAATATCTGAAAATACACAAGagggtccacactggagaaaagccgtaTCCGTGTCATTCG
>TCONS_00041145
AAAGGCAAAGGACTTTATTATCACAGGGTAACGTTGTGTCTTCAAAGCTGAGTTCTCCCACAGTGAAGCTTCACCAGTAAATGCTGAAATATTTCCATCAACCAAGAAGTGAAGCAAAGTTTTTGAGAGAACAGTGAGAACATGAGTGATTCAGGATCCTGCACAATAAAACAGGAAGATACTGAAGAACAAATAGaCTTGTTAAATGAGAAGACGGAGATTGAAGATCTGATTAAAAGGGGAGAGAAACATCAAATCAAAACAGAAGAACACCTTCACAGTATTTCATCAATAAGGAAAGACAACACATGTTTCACATGCCTTCAGAGTGCAAAGACTTTCTCATGCAAGGAAAGTCTGAATCTTCACATGAAAATCCATAAAGAGGTGAAGCCACACACATCTGATCAACATGAGAAGATTTCCACAGGAGAAGTTAAAGATAACATGAAAGTCCACGCTGAGGAAACGGTGTACAATTGTGATCAGTGTGACAGGATTTTCACAGATAAGAGAAATTTAGCCGCACACATGAAATTTCACAGCGGAGAGAAGCCCTTCATGTGTGATTTATGTGGGAGGAGTTTTCTTTatgcaaatacattaaaaaaacacagaaatttaCACAGCGCTGTGAAGAATCACGTCTGCTCCAAGTGTGGCAAGAGCTTTTTCACATATAGTTCGTTAAAAATCCACCACACAGCTCACGCTACAGAAAAACCTTTCAAATGTTCACACTGTGGCAAGGGGTTCAAATCATTACAGTGTCAACGAATACATGAGATGATCCACAGTGGAGAAAAGCCACACAAGTGCGATCAGTGCGAGAAGACTTTCAGACAGAGAAAAAGTTTAC

Function

symbol description
si:dkey-253d23.5 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-729 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000058566

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041144 False 1938 mRNA 0.41 3 9886903 9889413
TCONS_00041145 True 859 mRNA 0.39 3 9888207 9890386

Neighbor

gene id symbol gene type direction distance location
XLOC_020904 si:dkey-253d23.2 coding downstream 25372 9827288 ~ 9861531 (-)
XLOC_020903 BX539307.3 coding downstream 60434 9824521 ~ 9826469 (-)
XLOC_020902 NA coding downstream 112860 9752170 ~ 9774043 (-)
XLOC_020900 si:dkey-286j17.4 coding downstream 150853 9632831 ~ 9736050 (-)
XLOC_020901 BX664625.4 coding downstream 172572 9714214 ~ 9714331 (-)
XLOC_020906 znf990 coding upstream 2725 9893111 ~ 9896180 (-)
XLOC_020907 znf991 coding upstream 7642 9898028 ~ 9901788 (-)
XLOC_020908 si:dkey-253d23.8 coding upstream 13867 9904253 ~ 9906790 (-)
XLOC_020909 si:dkey-253d23.9 coding upstream 35704 9926090 ~ 9934854 (-)
XLOC_020910 nlrc7 coding upstream 56407 9946793 ~ 9974022 (-)
XLOC_020897 NA non-coding downstream 571731 9278778 ~ 9315172 (-)
XLOC_020896 NA non-coding downstream 581101 9276356 ~ 9305802 (-)
XLOC_020914 BX324213.1 non-coding upstream 186192 10076578 ~ 10079669 (-)
XLOC_020919 NA non-coding upstream 326406 10216792 ~ 10222529 (-)
XLOC_020935 BX465868.1 non-coding upstream 767632 10658018 ~ 10660997 (-)
XLOC_020936 BX465868.3 non-coding upstream 777472 10667858 ~ 10667974 (-)
XLOC_020937 BX465868.2 non-coding upstream 782783 10673169 ~ 10675595 (-)

Expression


Co-expression Network