XLOC_020906 (znf990)


Basic Information

Item Value
gene id XLOC_020906
gene name znf990
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9893111 ~ 9896180 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041146
GGGAACTCTtcggggaaaaataaaaaaagcaaatcaCAGGGTAACGTTGGGTCTTCAAGGCTGAGttCTTTAACTGTGAAGCTTCACCAGTAAATGCTGAAACATTCCCATCAACCAAGAAGTGAAGCAAAGTTTGTGAGAGAACAGTGAGAACATGAGTGATTCAGGAGTCTGCACAATAAAACAGGAAGATGCTGAAGAACAAATAGACTTGTTAAATGAGAACAAGGAGATTGAAGATCTGATTAAAAGGGGAGAGAAACATCACATCAAAACAGAAGAAAACCTTTACAGTATCTCAACGATAAGAAAAGACAATCCATGTTTCACATGCCTTCAGTGTAAAAACACTTTCTCATGCGAGGAAAGTCTAAATCTTCACATGAAGATTCATAGAGAGGTGAAGCCACACACCTCTGATCAATGTGATGAGATTTTCACCGTAAAAGTTACAAATAACGTAAATGTCCACGCTGAGGAAACGGTGTACAATTGTGATCAGTGTGACAGGACTTTCACAGATAAGAGAAATTTAGCCGCACACATGAAATTTCACAGCGGAGAGAAGCCCTTCATGTGTGATCTATGTGGGAGGAGTTTTCTTTatgcaaatacattaaaaaaacaccgAAATTTACACAGCGCTGTGAAGAATCACGTCTGCTCCAAGTGTGGCAAGAGCTTTTTCACATTCAGTCAATTAAAAATCCACCACACAGCTCACGCTACAGAAAAACCTTTCAAATGTTCACACTGTGGCAAGGCGTTCAAATCATTACAGTGTCAACGAATACATGAGATGATCCACAGCGGAGAAAAGCCACACAAGTGCGATCAGTGCGAGAAGACTTTCAGACAGAGGAAAAGTTTAAACATCCAC

Function

symbol description
znf990 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-232 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000078476

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041146 True 880 mRNA 0.40 3 9893111 9896180

Neighbor

gene id symbol gene type direction distance location
XLOC_020905 si:dkey-253d23.5 coding downstream 2725 9886903 ~ 9890386 (-)
XLOC_020904 si:dkey-253d23.2 coding downstream 31580 9827288 ~ 9861531 (-)
XLOC_020903 BX539307.3 coding downstream 66642 9824521 ~ 9826469 (-)
XLOC_020902 NA coding downstream 119068 9752170 ~ 9774043 (-)
XLOC_020900 si:dkey-286j17.4 coding downstream 157061 9632831 ~ 9736050 (-)
XLOC_020907 znf991 coding upstream 1848 9898028 ~ 9901788 (-)
XLOC_020908 si:dkey-253d23.8 coding upstream 8073 9904253 ~ 9906790 (-)
XLOC_020909 si:dkey-253d23.9 coding upstream 29910 9926090 ~ 9934854 (-)
XLOC_020910 nlrc7 coding upstream 50613 9946793 ~ 9974022 (-)
XLOC_020911 BX324216.2 coding upstream 119416 10015596 ~ 10019768 (-)
XLOC_020901 BX664625.4 non-coding downstream 178780 9714214 ~ 9714331 (-)
XLOC_020897 NA non-coding downstream 577939 9278778 ~ 9315172 (-)
XLOC_020896 NA non-coding downstream 587309 9276356 ~ 9305802 (-)
XLOC_020914 BX324213.1 non-coding upstream 180398 10076578 ~ 10079669 (-)
XLOC_020919 NA non-coding upstream 320612 10216792 ~ 10222529 (-)
XLOC_020935 BX465868.1 non-coding upstream 761838 10658018 ~ 10660997 (-)
XLOC_020936 BX465868.3 non-coding upstream 771678 10667858 ~ 10667974 (-)
XLOC_020937 BX465868.2 non-coding upstream 776989 10673169 ~ 10675595 (-)

Expression


Co-expression Network