XLOC_020909 (si:dkey-253d23.9)


Basic Information

Item Value
gene id XLOC_020909
gene name si:dkey-253d23.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9926090 ~ 9934854 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041150
ATGAGTGATCCAGAATCCTGCACAATAAAACTGGAAGATGTTGAAGAGCAAACAGttttagaCCTGCTGAATGAAAACAAAGAGAAGGAAGAACCGACTAAAAGTGGAGAGAAAAATGACATTAAATCCGCAGAAAAACTGCAGGATCCCTTATTGAAAGTAAAAGACAATCTATCTTTCACATGCCTTCAGTGTAAAAGGAACTTTTTGTGTGAGGAAAGTCTTAATCTTCACATGAAGATCCATAGAGAAGTGAAGCCACACACATCTGATCAATGTGAGAGGATTCCCACAGAAGAAGAAGCCCTTACGGATaacatgaaaatccacactgaGGAGGATACAGTCGGAAAGAAAGCGCACACATGTGATttatgtgggaagagttttcgtAAAACAGGTGATTTAAACATACATCAGAAAAGGCACAAAGGTTTGAGGGATCATGTTTGCTCCGAGTGTGGCAAGACCTTTTAtacaaaaagctgtttaaaaaatcACCAGAAAGTTCACTCTACAGAAACGCCTTATAAATGTTCATACTGTGAGAAAAGATTCAAACGGTCAATATATGtgaaaatacatgagaaaatCCACACTGGAACACAGCCGTACACCTGTGatcagtgcgggaagagtttcagataTAAAAGAGCTCTAGGCATACACAGCAcaatccacaccggagagaagccgttcaCATGTGATCATTGCGAGGCGAGTTTTGCCAGAAAGGACAGCCTTGCTAATCACATGAAACTCCACACCGGAGAGAATATGCACAAATGTgatcagtgtgggaaaagtttcagaAGATACGATGTTTTTAAAGCACATCTGCTTAGTCATTCTAGAGAAAGAATCTATAAATGCGACCAGTGCGATAAAAGCTTTTTTAGGCTGGATTTCCTGAGGGACCACCTAAAAATTCATACAGATGAGAGGCCATACGTGTGTTATTTGTGTGGTAGAAGTTTTCGCTTTATGAGTGCATTAAAATCACACCAGAAAAGGCACGACGGTGTGAAGGATCATATTTGCTCTGAGTGTGGGAAGACTTTCATTACATATAAAGCCTTAAAAGCACACCAGTCAACTCACTCTACAGAAACGCCTTATAaatgttcacactgtgacaagagttTCAAAAAGTCACAATATCTGAAAATACATGAGAAGAGCCACACTGGAGAACAGCCATACCAGTGTAATTTATGTGGGAAAAGGTTTACTTATTCTACTTCTCTGTACGGTCATAAAAAACGTGCATGTGTGAAAGCACAGTAA
>TCONS_00041151
ATCACCAGCGCAACGCAACGCCGAGTCTTCAGAGCTTGAGATTTTCTTCTCCAACCACATAGCaattctccttcagtgaagcTCATATTACTTTGTCAGTAATTGATGAAATATCGCCATCAACCAGCAAGTGAAGAATAGTTTATGAGGGCACAGTGAGAATATGAGTGATCCAGAATCCTGCACAATAAAACTGGAAGATGTTgaagaacaaacagttttagaCCTGCTGAATGAAAACAAAGAGAAGGAAGAACCGACTAAAAGTGGAGAGAAAAATGACATTAAATCCGCAGAAAAACTGCAGGATCCCTTATTGAAAGTAAAAGACAATCTATCTTTCACATGCCTTCAGTGTAAAAGGAACTTTTTGTGTGAGGAAAGTCTTAATCTTCACATGAAGATCCATAGAGAAGTGAAGCCACACACATCTGATCAATGTGAGAGGATTCCCACAGAAGAAGAAGCCCTTACGGATaacatgaaaatccacactgaGGAGGATACAGTCGGAAAGAAAGCGCACACATGTGATttatgtgggaagagttttcgtAAAACAGGTGATTTAAACATACATCAGAAAAGGCACAAAGGTTTGAGGGATCATGTTTGCTCCGAGTGTGGCAAGACCTTTTAtacaaaaagctgtttaaaaaatcACCAGAA
>TCONS_00041152
ATCACCAGCGCAACCCAACGCCGAGTCTTCAGAGCTTGAGATTTTCTTCTCCAACCACACAGCAATTCTTCCTCAGTGAAGCTAATATTACGTTGATTAATAGTTAATGATGAAATATCACTATTAACCAGCAGGTGAAGAATAGTTTATCAGGGCACAGTAAGAATATGAGTGATCCAGAATCCTGCACAATAAAACTGGAAGATGTTGAAGAGCAAACAGttttagaCCTGCTAAATGAAAACAAAGAGGAGGAACCGATTAAAAGGGGAGAGAAAAATGACATCAAAACTGCAGAAAAACtgtcattgaaaaaaaaagtgaacctTAAACTTCACATGAAGATTCATAAAGAAATGAAGCCACACACATCTGACAAGATTTCCACAGGAGAAGAAGCCCTTACAGATAACATGAAAATCCACTCTGAGGATACAGTGAACGATTGTGATGAGACTTTCACAAATACGGGAGATCTTAACACACAAGTCTTAACTCACACTGGAAAGAAAGTGTACACATGTGATttatgtgggaagagttttcgtGATCCAAGTACATTAAAAATCCATCATAAAAGACACAAAGGTTTGAGGGATCAGGTTTGCTCTACATGTGGCAAGACCTTTTTTACA

Function

symbol description
si:dkey-253d23.9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-631 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
ZDB-GENE-050208-648 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000074820 ENSDARG00000079236

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041150 False 1287 mRNA 0.40 2 9926090 9934011
TCONS_00041151 False 669 mRNA 0.39 3 9926871 9930079
TCONS_00041152 True 635 mRNA 0.38 3 9932767 9934854

Neighbor

gene id symbol gene type direction distance location
XLOC_020908 si:dkey-253d23.8 coding downstream 19300 9904253 ~ 9906790 (-)
XLOC_020907 znf991 coding downstream 24302 9898028 ~ 9901788 (-)
XLOC_020906 znf990 coding downstream 29910 9893111 ~ 9896180 (-)
XLOC_020905 si:dkey-253d23.5 coding downstream 35704 9886903 ~ 9890386 (-)
XLOC_020904 si:dkey-253d23.2 coding downstream 64559 9827288 ~ 9861531 (-)
XLOC_020910 nlrc7 coding upstream 11939 9946793 ~ 9974022 (-)
XLOC_020911 BX324216.2 coding upstream 80742 10015596 ~ 10019768 (-)
XLOC_020912 BX324216.3 coding upstream 102422 10037276 ~ 10051551 (-)
XLOC_020913 si:ch211-222k6.2 coding upstream 119482 10054336 ~ 10055744 (-)
XLOC_020914 BX324213.1 coding upstream 141724 10076578 ~ 10079669 (-)
XLOC_020903 BX539307.3 non-coding downstream 99621 9824521 ~ 9826469 (-)
XLOC_020902 NA non-coding downstream 152047 9752170 ~ 9774043 (-)
XLOC_020901 BX664625.4 non-coding downstream 211759 9714214 ~ 9714331 (-)
XLOC_020897 NA non-coding downstream 610918 9278778 ~ 9315172 (-)
XLOC_020896 NA non-coding downstream 620288 9276356 ~ 9305802 (-)
XLOC_020919 NA non-coding upstream 281938 10216792 ~ 10222529 (-)
XLOC_020935 BX465868.1 non-coding upstream 723164 10658018 ~ 10660997 (-)
XLOC_020936 BX465868.3 non-coding upstream 733004 10667858 ~ 10667974 (-)
XLOC_020937 BX465868.2 non-coding upstream 738315 10673169 ~ 10675595 (-)

Expression


Co-expression Network