XLOC_020914 (BX324213.1)


Basic Information

Item Value
gene id XLOC_020914
gene name BX324213.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10076578 ~ 10079669 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041160
aggactcggcgcacgcggccgcgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagaCATGTAACTTAACGTACTCCAGAGACGCAAtaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgaggggCATCAAGAACACGCAGATGGCCTAAATctgtgtcagcctggacagactgcagttctgctattccacgccaaggcttttgtatggatgtctgactactactgtgttctctaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatagTGAAATATGTGTAACAGGTCTagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcttactgctcgtagtaaacacacacgctgatctgatgcgggagagatatacgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccctatgaacatgcaatttttatgatactaataataatggaataactAATTgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatgcaaaaaaaacaacaaaaaactactaaatatttaccatgcagacctgcaaagtgaaGGAGTAATGTCAGGTTTAGATTATAGCAGTTTTTCACTATTGAGAAAgtgaagccattcattcacaatgaattggaatagcaaacctcattattgattttgtaggatactcacctggtgtttgagaaataaatatgtatttaactgctagactgatatagatgttttagtgttttacacttgattctTTGTCCCCAGTAACATCTTTTACCTCAAGTGTTTCTCAAaacctataaaacctcaaacagatgtaatgtat
>TCONS_00042342
ttacgaacacctgacctgcagtgcagcagaattcagaggtaagcgtgtttttagatgctttaatgttttatttacccaccgattttgttttacacacagtgtatcttaaatgtgacttggtgtagtgtttcgaattttgaagcatttaaaactttccagtttggtttgtcttgtttgcgctccggtgacgcgcagctaacctcgaggtaatgtcacatgtttaacgttagtctaaatgagcgttttttatggcaaattcaaagcgataaactccaaacgcagtttaaagttactgagcaacgttataaaacaatatcctttttatacgctgtatcatagtgttattattacaaagtgaactgctgtcgtttcactgttgttgttgttgcttttagaCATGTAACTTAACGTACTCCAGAGACGCAAtaacttgcacagcattgaatggaaaaggctttgtccatgtaagtATACTTTAACTTTAACTAAGctatctgttaaatcttcttggtgctttggttggtgatattctctttctaatctgtttgtttattgattgttaggctatgttgtgatattatattgttatattgatattattattgtgaaatcatgttgtgatgttatactatgtgacagtattggggaacaaatatgtatttagtaagaaattaatgcttaaattacactttgtatagtagcagataagaggtgtaatgggttttaattttctgggttttctggaaggtccagttgaggggCATCAAGAACACGCAGATGGCCTAAATctgtgtcagcctggacagactgcagttctgctattccacgccaaggcttttgtatggatgtctgactactactgtgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093873

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041160 False 1491 processed_transcript 0.38 4 10076578 10079669
TCONS_00042342 True 865 lncRNA 0.36 1 10078760 10079624

Neighbor

gene id symbol gene type direction distance location
XLOC_020913 si:ch211-222k6.2 coding downstream 20834 10054336 ~ 10055744 (-)
XLOC_020912 BX324216.3 coding downstream 25027 10037276 ~ 10051551 (-)
XLOC_020911 BX324216.2 coding downstream 56810 10015596 ~ 10019768 (-)
XLOC_020910 nlrc7 coding downstream 102556 9946793 ~ 9974022 (-)
XLOC_020909 si:dkey-253d23.9 coding downstream 141724 9926090 ~ 9934854 (-)
XLOC_020915 si:dkey-102c8.2 coding upstream 5903 10085572 ~ 10086446 (-)
XLOC_020916 gls2b coding upstream 18777 10098446 ~ 10121880 (-)
XLOC_020917 bloc1s1 coding upstream 44060 10123729 ~ 10127944 (-)
XLOC_020918 rbck1 coding upstream 65429 10145098 ~ 10165446 (-)
XLOC_020919 NA coding upstream 137123 10216792 ~ 10222529 (-)
XLOC_020903 BX539307.3 non-coding downstream 250109 9824521 ~ 9826469 (-)
XLOC_020902 NA non-coding downstream 302535 9752170 ~ 9774043 (-)
XLOC_020901 BX664625.4 non-coding downstream 362247 9714214 ~ 9714331 (-)
XLOC_020897 NA non-coding downstream 761406 9278778 ~ 9315172 (-)
XLOC_020896 NA non-coding downstream 770776 9276356 ~ 9305802 (-)
XLOC_020935 BX465868.1 non-coding upstream 578349 10658018 ~ 10660997 (-)
XLOC_020936 BX465868.3 non-coding upstream 588189 10667858 ~ 10667974 (-)
XLOC_020937 BX465868.2 non-coding upstream 593500 10673169 ~ 10675595 (-)
XLOC_020938 NA non-coding upstream 627106 10706775 ~ 10711531 (-)

Expression


Co-expression Network