G113770


Basic Information

Item Value
gene id G113770
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11434578 ~ 11435662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU130269
TCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATAACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130271
GTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130272
GTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130273
AGTTCAGGCCTCAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130274
TCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATAACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATGCTAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGGGATCACAGTTCAGAACTCAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130275
GTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130276
GTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130278
GTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATGCTAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130279
GTCTAGTCTAGTATGGACCAGGTGATAACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130280
GTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGCCTCAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta
>TU130281
GTCTAGTCTAGTATGGACCAGGTGATAACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCCTAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCTCAGTTCAGGTCACAGTCTAGTCTAGTATGGACCAGGTGATCACAGTTCACAGTCTAGtctagta

Function

NR:

description
PREDICTED: uncharacterized protein LOC106584851

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU130269 False 356 lncRNA 0.47 2 11434578 11435264
TU130271 False 329 lncRNA 0.37 5 11434578 11435662
TU130272 False 334 lncRNA 0.39 5 11434578 11435662
TU130273 False 263 lncRNA 0.39 3 11434578 11435423
TU130274 False 524 lncRNA 0.46 3 11434578 11435264
TU130275 False 334 lncRNA 0.44 5 11434578 11435662
TU130276 False 418 lncRNA 0.45 4 11434578 11435662
TU130278 False 371 lncRNA 0.42 5 11434578 11435662
TU130279 False 292 lncRNA 0.36 3 11434578 11435662
TU130280 False 302 lncRNA 0.48 3 11434578 11435662
TU130281 True 465 lncRNA 0.45 3 11434578 11435662

Neighbor

gene id symbol gene type direction distance location
LOC110514530 LOC106572903 coding downstream 31716 11398092 ~ 11402862 (-)
prelid3a LOC106593866 coding downstream 173069 11196145 ~ 11261793 (-)
lratd2b LOC106573048 coding downstream 265940 11165113 ~ 11168638 (-)
LOC118937688 NA coding downstream 375105 11058263 ~ 11060049 (-)
LOC118937685 NA coding downstream 553188 10879856 ~ 10881390 (-)
LOC110513475 LOC106592216 coding upstream 36277 11471939 ~ 12290710 (-)
LOC118937712 NA coding upstream 148546 11584208 ~ 11585455 (-)
LOC118937710 NA coding upstream 149897 11585559 ~ 11586577 (-)
LOC118937716 NA coding upstream 523617 11959279 ~ 11960863 (-)
LOC118937715 NA coding upstream 525892 11961554 ~ 11962594 (-)
G113767 NA non-coding downstream 4516 11429701 ~ 11430062 (-)
G113762 NA non-coding downstream 11821 11421055 ~ 11422757 (-)
G113761 NA non-coding downstream 15061 11417910 ~ 11419517 (-)
G113758 NA non-coding downstream 19671 11414656 ~ 11414907 (-)
G113749 NA non-coding downstream 34564 11398598 ~ 11400014 (-)
G113771 LOC106596421 non-coding upstream 3089 11438751 ~ 11451565 (-)
G113755 NA non-coding upstream 34103 11469765 ~ 11524208 (-)
G113784 NA non-coding upstream 45267 11480929 ~ 11482264 (-)
G113785 NA non-coding upstream 45580 11481242 ~ 11481898 (-)
G113786 NA non-coding upstream 49690 11485352 ~ 11485716 (-)
G113733 LOC106606124 other downstream 81837 11349342 ~ 11352741 (-)
G113720 NA other downstream 108966 11323041 ~ 11325612 (-)
G113712 NA other downstream 121920 11310843 ~ 11312658 (-)
G113688 NA other downstream 216424 11210473 ~ 11218154 (-)
G113096 NA other downstream 412844 11021041 ~ 11021734 (-)
G114390 NA other upstream 1148365 12584027 ~ 12585140 (-)
G114402 NA other upstream 1175007 12610669 ~ 12613680 (-)
G114424 NA other upstream 1272165 12707827 ~ 12709315 (-)
G114442 NA other upstream 1299652 12735314 ~ 12739157 (-)

Expression


Co-expression Network