G113771 (LOC106596421)


Basic Information

Item Value
gene id G113771
gene name LOC106596421
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11438751 ~ 11451565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU130284
CCTGTTGACTAGGGTAAAGCAGCTCTCTACTCTCCTGTAGTCCTTTGTGTTTCTCCTCATGCTCCTCTGGAAacctctccacttcctcctgggctctcctctccacttccttttcctcctctcgCCTCCTGAGACGCTGCAGTTTAGCACTCTGTTTGTTCACGCTGTTCTGCAACAGCggcaacacctcctcctcctgcacACCGCTGCTGAACGACAGGAACTCTGGCCACAGCTTCAGTAGCTCACTGAACACACACATctactacacacagagagagagacagagagagacagagagag
>TU130282
CCTGTTGACTAGGGTAAAGCAGCTCTCTACTCTCCTGTAGTCCTTTGTGTTTCTCCTCATGCTCCTCTGGAAacctctccacttcctcctgggctctcctctccacttccttttcctcctctcgCCTCCTGAGACGCTGCAGTTTAGCACTCTGTTTGTTCACGCTGTTCTGCAACAGCggcaacacctcctcctcctgcacACCGCTGCTGAACGACAGGAACTCTGGCCACAGCTTCAGTAGCTCACTGAACACACACATctactacacacagagagagagagagagaaacagagagagacagagagagacagagagagagacagagagagagagagtgctggccCAATGCTTCATAccgtgtcaagttggctggatgtcgtttgagtggtggaccattcttgatacacacaggaagttCTTGATACATTCAAACTGGTgctcctgacacctactaccaaacccatTTCAAAGGCACGTCAGTCTTTTGTCTTTCCCCTTcaactctctgaatggcacacctggattcacctggtcagtgtgtgtcatggaaagaggaaTGTTTGGTACACCCAGCGTatatcactgtctgtctgtctgagtaggTGTATCTACTCCAGTCAGTCTGTCTGAGTAGGTGTATctactccagtcagtcagtcagtctgtctgtctgtctgagtaggTGTATctactccagtcagtcagtcagtctgtctgtctgtctgtgtacctgAGCCTCTCTGAAGACGTAGGgctccatctcccccctcctctccaggaTGTGTGTTGCCTGCTCTGGGGGGATGTCTATCTgcagggctgtctgtctgtctgtgtacctgAGCCTCTCTGAAGACGTAGGgctccatctcccccctcctctccaggaTGTGTGTTGCCTGCTCTGGGGGGATGTCTATCTgcagggctgtctgtctgtctgtgtacctgAGCCTCTCTGAAGACGTAGGGCcccatctcccccctcctctccaggaTGTGTGTTGCCTGCTCTGGGGGGATGTCTATCTgcagggctgtctgtctgtctgtgtacctgAGCCTCTCTGAAGACGTAGGgctccatctcccccctcctctccaggaTGTGTGTTGCCTGCTCTGGGGGGATGTCTATCTgcagggctgtctgtctgtctgtgtacctgAGCCTCTCTGAAGACGTAGGgctccatctcccccctcctctccaggaTGTGTGTTGCCTGCTCTGGGGGGATGTCTATCTgcagggctgtctgtctgtctgtgtacctgAGACTCTCTGAAGACGTAGGGCcccatctcccccctcctctccaggaTGTGTGTTGCCTGCTCTTGGGGGATGTCTATCTGCAGGGCTGGGGGGACGGAGGACTGGATGAAACAGCTGATGATGGTGGACACCTTGTCCTGGACTACAGCCTCCACACAGTGGGAATGACACAGATCctaatgggagagagggagggatgaaatgggggggagagggagg

Function

NR:

description
PREDICTED: regulator of G-protein signaling 22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130284 False 303 lncRNA 0.32 2 11438751 11451565
TU130282 True 1502 lncRNA 0.54 3 11449464 11451565

Neighbor

gene id symbol gene type direction distance location
LOC110514530 LOC106572903 coding downstream 35889 11398092 ~ 11402862 (-)
prelid3a LOC106593866 coding downstream 177242 11196145 ~ 11261793 (-)
lratd2b LOC106573048 coding downstream 270113 11165113 ~ 11168638 (-)
LOC118937688 NA coding downstream 379278 11058263 ~ 11060049 (-)
LOC118937685 NA coding downstream 557361 10879856 ~ 10881390 (-)
LOC110513475 LOC106592216 coding upstream 20374 11471939 ~ 12290710 (-)
LOC118937712 NA coding upstream 132643 11584208 ~ 11585455 (-)
LOC118937710 NA coding upstream 133994 11585559 ~ 11586577 (-)
LOC118937716 NA coding upstream 507714 11959279 ~ 11960863 (-)
LOC118937715 NA coding upstream 509989 11961554 ~ 11962594 (-)
G113770 NA non-coding downstream 3089 11434578 ~ 11435662 (-)
G113767 NA non-coding downstream 8689 11429701 ~ 11430062 (-)
G113762 NA non-coding downstream 15994 11421055 ~ 11422757 (-)
G113761 NA non-coding downstream 19234 11417910 ~ 11419517 (-)
G113758 NA non-coding downstream 23844 11414656 ~ 11414907 (-)
G113755 NA non-coding upstream 18200 11469765 ~ 11524208 (-)
G113784 NA non-coding upstream 29364 11480929 ~ 11482264 (-)
G113785 NA non-coding upstream 29677 11481242 ~ 11481898 (-)
G113786 NA non-coding upstream 33787 11485352 ~ 11485716 (-)
G113787 NA non-coding upstream 37850 11489415 ~ 11490964 (-)
G113733 LOC106606124 other downstream 86010 11349342 ~ 11352741 (-)
G113720 NA other downstream 113139 11323041 ~ 11325612 (-)
G113712 NA other downstream 126093 11310843 ~ 11312658 (-)
G113688 NA other downstream 220597 11210473 ~ 11218154 (-)
G113096 NA other downstream 417017 11021041 ~ 11021734 (-)
G114390 NA other upstream 1132462 12584027 ~ 12585140 (-)
G114402 NA other upstream 1159104 12610669 ~ 12613680 (-)
G114424 NA other upstream 1256262 12707827 ~ 12709315 (-)
G114442 NA other upstream 1283749 12735314 ~ 12739157 (-)

Expression


Co-expression Network