G113305 (LOC106595260)


Basic Information

Item Value
gene id G113305
gene name LOC106595260
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11447602 ~ 11448392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU129539
CACTGGGCCTTGGTAATCTGGTATTGTTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGTTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGTTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGTTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTG
>TU129540
CACTGGGCCTTGGTAATCTGGTATTGTTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGTTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGTTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGTTATCTCTGGGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTGAGGTCTACACTGGGCCTTGGTAATCTGGTGCTGCTATCTCTG

Function

NR:

description
PREDICTED: keratinocyte proline-rich protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129539 False 539 lncRNA 0.47 3 11447602 11448392
TU129540 True 539 lncRNA 0.52 3 11447602 11448392

Neighbor

gene id symbol gene type direction distance location
fbxo43 fbxo43 coding upstream 33889 11402943 ~ 11413713 (+)
echdc1 echdc1 coding upstream 50294 11392942 ~ 11397308 (+)
soga3a LOC106593623 coding upstream 74602 11328026 ~ 11373000 (+)
LOC110520740 LOC106592347 coding upstream 122795 11307174 ~ 11324807 (+)
LOC118944054 NA coding upstream 170045 11274681 ~ 11277557 (+)
LOC110511179 NA coding downstream 851147 12299517 ~ 12300453 (+)
LOC118944185 NA coding downstream 1023848 12430935 ~ 12555437 (+)
LOC110513835 nipal2 coding downstream 1113945 12562337 ~ 12616197 (+)
LOC110510520 rida coding downstream 1225693 12674085 ~ 12680150 (+)
spag1b LOC106592835 coding downstream 1268182 12716574 ~ 12776832 (+)
G113292 NA non-coding upstream 24647 11422163 ~ 11422955 (+)
G113286 NA non-coding upstream 31816 11415508 ~ 11415786 (+)
G113282 NA non-coding upstream 56019 11390836 ~ 11391583 (+)
G113281 NA non-coding upstream 63216 11384098 ~ 11384386 (+)
G113279 NA non-coding upstream 68163 11379135 ~ 11379439 (+)
LOC110510416 LOC106596421 non-coding downstream 2979 11416206 ~ 11459325 (+)
G113288 NA non-coding downstream 4404 11452796 ~ 11455854 (+)
G113311 LOC106593635 non-coding downstream 21396 11469788 ~ 11524208 (+)
G113323 NA non-coding downstream 49320 11497712 ~ 11498170 (+)
G113328 NA non-coding downstream 59047 11507439 ~ 11511358 (+)
G113285 NA other upstream 32424 11414931 ~ 11415178 (+)
elovl4a LOC106606161 other upstream 174602 11260912 ~ 11275480 (+)
fbxo32 fbxo32 other upstream 204533 11227497 ~ 11243074 (+)
G112697 NA other upstream 621539 10811518 ~ 10826063 (+)
LOC118937659 NA other upstream 1671151 9773574 ~ 9776807 (+)
G113313 LOC102781083 other downstream 29584 11477976 ~ 11482741 (+)
G113396 NA other downstream 260211 11708603 ~ 11709777 (+)
G114243 NA other downstream 1272016 12720408 ~ 12720693 (+)
G114244 NA other downstream 1272338 12720730 ~ 12721315 (+)
G114263 NA other downstream 1313840 12762232 ~ 12762827 (+)

Expression


Co-expression Network