G113288


Basic Information

Item Value
gene id G113288
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11452796 ~ 11455854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU129505
cagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatagtacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattac
>TU129507
cagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatagtacagtctggtcctctctacagtatagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatagtacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagtctggtcctctctacagtatattacagctaTGGCCCATTAACAGATGGATCTCTACAGCACTACACAGGTTCCCCAGTGTGTCTGTTGTTAATGCGCGGTAGTTTGTCCGTTAGCTGTATCCATCTCAGACCTTGTGGCTGTAGTAATGATCTAAGACCTTGTGGCTGTAGTAATGATCTCAGACCTGTCTACATAGAAACATGGACCTTCTGTCTACATAGAAACATGGACCTTCTGTCTACATAGAAACATGGACCTTCTGTCTACATAGAAACATGGACCTTCTGTCTACATATGGACCTTCTGTCTACATAGAAACGTGGACCTTCTGTCTACATATGGACCTTCTGTCTACA

Function

NR:

description
PREDICTED: involucrin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129505 False 1190 lncRNA 0.47 2 11452796 11454130
TU129507 True 1136 lncRNA 0.42 2 11452796 11455854

Neighbor

gene id symbol gene type direction distance location
fbxo43 fbxo43 coding upstream 39083 11402943 ~ 11413713 (+)
echdc1 echdc1 coding upstream 55488 11392942 ~ 11397308 (+)
soga3a LOC106593623 coding upstream 79796 11328026 ~ 11373000 (+)
LOC110520740 LOC106592347 coding upstream 127989 11307174 ~ 11324807 (+)
LOC118944054 NA coding upstream 175239 11274681 ~ 11277557 (+)
LOC110511179 NA coding downstream 843685 12299517 ~ 12300453 (+)
LOC118944185 NA coding downstream 1016386 12430935 ~ 12555437 (+)
LOC110513835 nipal2 coding downstream 1106483 12562337 ~ 12616197 (+)
LOC110510520 rida coding downstream 1218231 12674085 ~ 12680150 (+)
spag1b LOC106592835 coding downstream 1260720 12716574 ~ 12776832 (+)
G113305 LOC106595260 non-coding upstream 4404 11447602 ~ 11448392 (+)
G113292 NA non-coding upstream 29841 11422163 ~ 11422955 (+)
G113286 NA non-coding upstream 37010 11415508 ~ 11415786 (+)
G113282 NA non-coding upstream 61213 11390836 ~ 11391583 (+)
G113281 NA non-coding upstream 68410 11384098 ~ 11384386 (+)
G113311 LOC106593635 non-coding downstream 13934 11469788 ~ 11524208 (+)
G113323 NA non-coding downstream 41858 11497712 ~ 11498170 (+)
G113328 NA non-coding downstream 51585 11507439 ~ 11511358 (+)
G113334 NA non-coding downstream 69872 11525726 ~ 11526083 (+)
G113339 LOC106593525 non-coding downstream 88602 11544456 ~ 11545199 (+)
G113285 NA other upstream 37618 11414931 ~ 11415178 (+)
elovl4a LOC106606161 other upstream 179796 11260912 ~ 11275480 (+)
fbxo32 fbxo32 other upstream 209727 11227497 ~ 11243074 (+)
G112697 NA other upstream 626733 10811518 ~ 10826063 (+)
LOC118937659 NA other upstream 1676345 9773574 ~ 9776807 (+)
G113313 LOC102781083 other downstream 22122 11477976 ~ 11482741 (+)
G113396 NA other downstream 252749 11708603 ~ 11709777 (+)
G114243 NA other downstream 1264554 12720408 ~ 12720693 (+)
G114244 NA other downstream 1264876 12720730 ~ 12721315 (+)
G114263 NA other downstream 1306378 12762232 ~ 12762827 (+)

Expression


Co-expression Network