Gene
RNA
| Item | Value |
|---|---|
| gene id | G113339 |
| gene name | LOC106593525 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 11544456 ~ 11545199 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: vacuolar protein sorting-associated protein 13B-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU129602 | False | 352 | lncRNA | 0.42 | 2 | 11544456 | 11545199 |
| TU129604 | True | 360 | lncRNA | 0.52 | 2 | 11544456 | 11544913 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110510416 | LOC106596421 | coding | upstream | 86025 | 11416206 ~ 11459325 (+) |
| fbxo43 | fbxo43 | coding | upstream | 130743 | 11402943 ~ 11413713 (+) |
| echdc1 | echdc1 | coding | upstream | 147148 | 11392942 ~ 11397308 (+) |
| soga3a | LOC106593623 | coding | upstream | 171456 | 11328026 ~ 11373000 (+) |
| LOC110520740 | LOC106592347 | coding | upstream | 219649 | 11307174 ~ 11324807 (+) |
| LOC110511179 | NA | coding | downstream | 754340 | 12299517 ~ 12300453 (+) |
| LOC118944185 | NA | coding | downstream | 927041 | 12430935 ~ 12555437 (+) |
| LOC110513835 | nipal2 | coding | downstream | 1017138 | 12562337 ~ 12616197 (+) |
| LOC110510520 | rida | coding | downstream | 1128886 | 12674085 ~ 12680150 (+) |
| spag1b | LOC106592835 | coding | downstream | 1171375 | 12716574 ~ 12776832 (+) |
| G113334 | NA | non-coding | upstream | 18373 | 11525726 ~ 11526083 (+) |
| G113311 | LOC106593635 | non-coding | upstream | 20248 | 11469788 ~ 11524208 (+) |
| G113328 | NA | non-coding | upstream | 33098 | 11507439 ~ 11511358 (+) |
| G113323 | NA | non-coding | upstream | 46286 | 11497712 ~ 11498170 (+) |
| G113343 | NA | non-coding | downstream | 2336 | 11547535 ~ 11548604 (+) |
| G113344 | vps13b | non-coding | downstream | 6347 | 11551546 ~ 11552270 (+) |
| G113348 | NA | non-coding | downstream | 12326 | 11557525 ~ 11558379 (+) |
| G113350 | NA | non-coding | downstream | 18808 | 11564007 ~ 11564528 (+) |
| G113340 | NA | non-coding | downstream | 20111 | 11565310 ~ 11565683 (+) |
| G113313 | LOC102781083 | other | upstream | 61715 | 11477976 ~ 11482741 (+) |
| G113285 | NA | other | upstream | 129278 | 11414931 ~ 11415178 (+) |
| elovl4a | LOC106606161 | other | upstream | 271456 | 11260912 ~ 11275480 (+) |
| fbxo32 | fbxo32 | other | upstream | 301387 | 11227497 ~ 11243074 (+) |
| G112697 | NA | other | upstream | 718393 | 10811518 ~ 10826063 (+) |
| G113396 | NA | other | downstream | 163404 | 11708603 ~ 11709777 (+) |
| G114243 | NA | other | downstream | 1175209 | 12720408 ~ 12720693 (+) |
| G114244 | NA | other | downstream | 1175531 | 12720730 ~ 12721315 (+) |
| G114263 | NA | other | downstream | 1217033 | 12762232 ~ 12762827 (+) |
| G114323 | NA | other | downstream | 1404161 | 12949360 ~ 12964930 (+) |
