G113344 (vps13b)


Basic Information

Item Value
gene id G113344
gene name vps13b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11551546 ~ 11552270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU129615
atagtgaaggtgtagactagtaTTCACctgctagttagttagttagttagttagttagttagagggGTTTAAACTAACACAGCAGCtgatagtgaaggtgtagactagtaTTCACctgctagttagttagttagagggGTTTAAACTAACACAGTAAACTGAGGACAAAGACAAACAGAATGGCACGACAGGAGGACGGGTTGCACATGAATTGCCTTTTGGGAACAATAAAGATTTATTGAATTGAATACGGTACCTGTTTCTGGACACCGTTGAGCTGCAACACCTTGATGATGAGCGAGGCAGTCCGTCCTTTATATTGAATAGTCCTCAACAGAGTCCCCACGTTGTCCACACTGAAGGCCTCAGACCAACGCCAGTTACCCCAGCCCTCTATACAGATATgaaggagctggaggagaggag

Function

symbol description
vps13b Predicted to be involved in protein transport. Implicated in Cohen syndrome.

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 13B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129615 True 426 lncRNA 0.44 2 11551546 11552270

Neighbor

gene id symbol gene type direction distance location
LOC110510416 LOC106596421 coding upstream 93115 11416206 ~ 11459325 (+)
fbxo43 fbxo43 coding upstream 137833 11402943 ~ 11413713 (+)
echdc1 echdc1 coding upstream 154238 11392942 ~ 11397308 (+)
soga3a LOC106593623 coding upstream 178546 11328026 ~ 11373000 (+)
LOC110520740 LOC106592347 coding upstream 226739 11307174 ~ 11324807 (+)
LOC110511179 NA coding downstream 747269 12299517 ~ 12300453 (+)
LOC118944185 NA coding downstream 919970 12430935 ~ 12555437 (+)
LOC110513835 nipal2 coding downstream 1010067 12562337 ~ 12616197 (+)
LOC110510520 rida coding downstream 1121815 12674085 ~ 12680150 (+)
spag1b LOC106592835 coding downstream 1164304 12716574 ~ 12776832 (+)
G113343 NA non-coding upstream 2942 11547535 ~ 11548604 (+)
G113339 LOC106593525 non-coding upstream 6347 11544456 ~ 11545199 (+)
G113334 NA non-coding upstream 25463 11525726 ~ 11526083 (+)
G113311 LOC106593635 non-coding upstream 27338 11469788 ~ 11524208 (+)
G113348 NA non-coding downstream 5255 11557525 ~ 11558379 (+)
G113350 NA non-coding downstream 11737 11564007 ~ 11564528 (+)
G113340 NA non-coding downstream 13040 11565310 ~ 11565683 (+)
G113353 NA non-coding downstream 20540 11572810 ~ 11575573 (+)
G113372 NA non-coding downstream 76677 11628947 ~ 11629987 (+)
G113313 LOC102781083 other upstream 68805 11477976 ~ 11482741 (+)
G113285 NA other upstream 136368 11414931 ~ 11415178 (+)
elovl4a LOC106606161 other upstream 278546 11260912 ~ 11275480 (+)
fbxo32 fbxo32 other upstream 308477 11227497 ~ 11243074 (+)
G112697 NA other upstream 725483 10811518 ~ 10826063 (+)
G113396 NA other downstream 156333 11708603 ~ 11709777 (+)
G114243 NA other downstream 1168138 12720408 ~ 12720693 (+)
G114244 NA other downstream 1168460 12720730 ~ 12721315 (+)
G114263 NA other downstream 1209962 12762232 ~ 12762827 (+)
G114323 NA other downstream 1397090 12949360 ~ 12964930 (+)

Expression


Co-expression Network