G113340


Basic Information

Item Value
gene id G113340
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11565310 ~ 11565683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU129607
ATATAGTACTATAAACACAGGAGAAACAAGGAGAATAGAAGTAGAGTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTGATGTaggagtgag
>TU129608
ATATAGTACTATAAACACAGGAGAAACAAGGAGAATAGAAGTAGAGTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTGATGTaggagtgag
>TU129609
ATATAGTACTATAAACACAGGAGAAACAAGGAGAATAGAAGTAGAGTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagagtgtgtgtgtagtagagTGTTATGTgatgtaggagagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTGATGTaggagtgag
>TU129610
ATATAGTACTATAAACACAGGAGAAACAAGGAGAATAGAAGTAGAGTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagcagagtGTTATGTgatgtaggagagtgtgtgtgtagtagagTGTTATGTgatgtaggagtgtgtgtgtagtagagTGTTATGTGATGTaggagtgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129607 False 308 lncRNA 0.41 2 11565310 11565683
TU129608 False 306 lncRNA 0.48 2 11565310 11565683
TU129609 False 310 lncRNA 0.41 3 11565310 11565683
TU129610 True 274 lncRNA 0.48 2 11565310 11565683

Neighbor

gene id symbol gene type direction distance location
LOC110510416 LOC106596421 coding upstream 106879 11416206 ~ 11459325 (+)
fbxo43 fbxo43 coding upstream 151597 11402943 ~ 11413713 (+)
echdc1 echdc1 coding upstream 168002 11392942 ~ 11397308 (+)
soga3a LOC106593623 coding upstream 192310 11328026 ~ 11373000 (+)
LOC110520740 LOC106592347 coding upstream 240503 11307174 ~ 11324807 (+)
LOC110511179 NA coding downstream 733856 12299517 ~ 12300453 (+)
LOC118944185 NA coding downstream 906557 12430935 ~ 12555437 (+)
LOC110513835 nipal2 coding downstream 996654 12562337 ~ 12616197 (+)
LOC110510520 rida coding downstream 1108402 12674085 ~ 12680150 (+)
spag1b LOC106592835 coding downstream 1150891 12716574 ~ 12776832 (+)
G113350 NA non-coding upstream 782 11564007 ~ 11564528 (+)
G113348 NA non-coding upstream 6931 11557525 ~ 11558379 (+)
G113344 vps13b non-coding upstream 13040 11551546 ~ 11552270 (+)
G113343 NA non-coding upstream 16706 11547535 ~ 11548604 (+)
G113339 LOC106593525 non-coding upstream 20111 11544456 ~ 11545199 (+)
G113353 NA non-coding downstream 7127 11572810 ~ 11575573 (+)
G113372 NA non-coding downstream 63264 11628947 ~ 11629987 (+)
G113373 NA non-coding downstream 64439 11630122 ~ 11630512 (+)
G113384 NA non-coding downstream 97798 11663481 ~ 11663949 (+)
G113387 NA non-coding downstream 100915 11666598 ~ 11667653 (+)
G113313 LOC102781083 other upstream 82569 11477976 ~ 11482741 (+)
G113285 NA other upstream 150132 11414931 ~ 11415178 (+)
elovl4a LOC106606161 other upstream 292310 11260912 ~ 11275480 (+)
fbxo32 fbxo32 other upstream 322241 11227497 ~ 11243074 (+)
G112697 NA other upstream 739247 10811518 ~ 10826063 (+)
G113396 NA other downstream 142920 11708603 ~ 11709777 (+)
G114243 NA other downstream 1154725 12720408 ~ 12720693 (+)
G114244 NA other downstream 1155047 12720730 ~ 12721315 (+)
G114263 NA other downstream 1196549 12762232 ~ 12762827 (+)
G114323 NA other downstream 1383677 12949360 ~ 12964930 (+)

Expression


Co-expression Network