XLOC_020918 (rbck1)


Basic Information

Item Value
gene id XLOC_020918
gene name rbck1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10145098 ~ 10165446 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041168
GAGCACGGATGGTTTTATCACCACGTACTATAACCATAAACACAACACGAAGCGTGTTTTAAACGTTTGTCCTATGGTTGCTTTCAAGATTAAAGTATGGCTGCTCTTGATGCCTCTAGAAATGTAACGGAAGCGGAGGATGCCGCTCGACTTCTTAGTGACGCCATCAACTCCAGAGACAAAGATGAAGCAACTAAATACCTGAATCAACTTCTGGATCTGAAACTCCCAGTGAGCGTCAAAATTAATCCAGATGCATATTCTCAAGACAACATCAGATTAAGAGTTGGAGTGGCTGATGCTGAATCAGAACATCACATCCCAATAACAGTGATGGTACCAGTTTACATGACAATATCCGAGCTGAAGGAAAAGATCAACGGTGACTATGGCTTCCATCCGTCTCTCCAGCGCTGGGTGATCGGGAAGCGTCTCGCCCAGGACAAAGAAACCCTTTATTTTTATGGGATCCGAAACCACGATGATTCTGCCTTCCTCTTCATCCGCTCTGCTCAGTCTGTCAATCTGCGCCGCGAACaagagagaagagagaaagaggagaggcaGATCGATGTTATAATGGAGACCATTGAACGTCCTCTTCAACGTCCACCAGAGCGCATCACTAGAGGAAACACTCGCCCTGCTCTACCTCCAAAACCCAAATTTCTGGATGGTTGGGCATGTCCTCAGTGCACGTACCTGAATAAACCGACACGTCCAGGTTGTGAGATGTGCAGCACGGCGAGACCCGACAACTATCAGGTGCCGGACTTGTACCAGCCGGACGAGTCTGAAACCAGGAGACTACAGCAGGAGGAACTCGCCAGCCTGCAGTATGAGCAGTCTCTGTTACAAGAGGAAGAAAGAAATTTCCTTGAACGGCAGAGGAATTACGAAGAACTCCTGCAAACAGATGCACACAGCCTGGTGGGAAACACAGATCAGCTGGAGTGCGCCATTTGTTTTGGCACCATCATGCCAGGAGAGGGCGCCGTTTTAAGAGAGTGCCTTCATAGCTTCTGCAGGGACTGTCTGAAAGGGACCGTAGTGAACTGCCTGGACGCTGAGGTTTGTTGTCCTTATGGAGACAACGCTTATGCCTGTAACTGCAAACTCCAAGATCGAGAGATCAAATCTCTTCTCACTCAGGACGAGTACCAAAAATTCCTAGAACTGCGGCTGAATATCGCTGAGTCCCGCAGTGAGAACAGTTACCATTGCAAAACCCCGGACTGCGCTGGCTGGTGCATCTTCGAAGATGACGTTAACGAATTTAAGTGCGACATCTGCAATGAGACCAACTGCCTCCTCTGCAAGGCTATTCATAAAGGAATGAACTGCAAGGAGTACCAGGACGACCTACGTGTGAGAGCGCAGAACGATGAAGCGGCTCGGCAGACCACAGAGATGCTGGATCAACTGCTAAAGAATGGCGAGGCGATGAACTGTCCCAAATGTCAGGTGATCGTCCAGAAGAAAGACGGCTGTGACTGGATCTGTTGTCTAATGTGCAAAACCGAGATCTGCTGGGTGACCAAACAAGCCCGATGGGGACCTTTGGGTGCTGGAGACACATCAGGCGGATGCAAATGTCGAGTAAACGGAGTCCTTTGTCATCCGCAATGCCAGAACTGCCACTAAACACTAGCAAATCGCTAAACGCTACTTCctcaacaagcaaaaaaaaaatgctacaacAACATAACACTCCATAATGTGATTTTTGGTTTTTTCAGGTTTCAGGTTTGGCCTTTAAAATGATGTATATTCAAATTTTCACTGTCTAGTCTTATAACTGGTGCATCCCAAAAAAAGGGTGTttgattgtttaaaatgtttataaaattaattGTACGTTTACATGACACCATTTGTAACTTAATGTGTTTCGGCGCCATGAAAATGCTAACTTTGGTTTTAAAGTgaacattattttaaaactatacaATATTTTCATCTCGTTAATTTTGAAAATTCGATTCTGTAAAAAACTGTGACGTCCTGTGTTAAtatttgtcagaaaaaaaaaaagttacgtgCTAACTAAAGAACCATATGACCTTATGTTTCTGTATATCGCCACCTACTGGTCTGGCATACGAAATAcggcagtttttgttattttagagCAGGGAGCTATCGCAAACGTATGTacacaaaatattttgtgtttctaTTATATTTCTGTCATGTAAACGTACCCTAAAAGTATATGAgctttaatataaatttaaaaatgcctCAAATCACTACTGTTTTCTGCTGAACTCATGCTCTGGGACTTTGTGCAATGAAACCGAAAGAGAAAGAGCTGTATTATGTGGTATCTGAATATTAATTTGAAGGGAATCTGTGCTTAGAATCCAAagatgtacttttttttaaattgacaaatTATAGCAAAGGATTCAACATGAATCAATCGATTAAAGAACAACAGTTCCATGAAATTGAGAGAAGTTTTATAAAATCCCCAAAATACTTTATTGCTGATATGTGATGCATATAATCTTGtagatttattttctatttttttaaagcatgtgaATGCATTATAATTCTGTTTACTGATTTCAGCTTgtttacaatgttttataatcaaataaagctgctataaaaaaattaa
>TCONS_00041169
aaaCAAGCTTTCAAGATTAAAGTATGGCTGCTCTTGATGCCTCTAGAAATGTAACGGAAGCGGAGGATGCCGCTCGACTTCTTAGTGACGCCATCAACTCCAGAGACAAAGATGAAGCAACTAAATACCTGAATCAACTTCTGGATCTGAAACTCCCAGTGAGCGTCAAAATTAATCCAGATGCATATTCTCAAGACAACATCAGATTAAGAGTTGGAGTGGCTGATGCTGAATCAGAACATCACATCCCAATAACAGTGATGGTACCAGTTTACATGACAATATCCGAGCTGAAGGAAAAGATCAACGGTGACTATGGCTTCCATCCGTCTCTCCAGCGCTGGGTGATCGGGAAGCGTCTCGCCCAGGACAAAGAAACCCTTTATTTTTATGGGATCCGAAACCACGATGATTCTGCCTTCCTCTTCATCCGCTCTGCTCAGTCTGTCAATCTGCGCCGCGAACaagagagaagagagaaagaggagaggcaGATCGATGTTATAATGGAGACCATTGAACGTCCTCTTCAACGTCCACCAGAGCGCATCACTAGAGGAAACACTCGCCCTGCTCTACCTCCAAAACCCAAATTTCTGGATGGTTGGGCATGTCCTCAGTGCACGTACCTGAATAAACCGACACGTCCAGGTTGTGAGATGTGCAGCACGGCGAGACCCGACAACTATCAGGTGCCGGACTTGTACCAGCCGGACGAGTCTGAAACCAGGAGACTACAGCAGGAGGAACTCGCCAGCCTGCAGTATGAGCAGTCTCTGTTACAAGAGGAAGAAAGAAATTTCCTTGAACGGCAGAGGAATTACGAAGAACTCCTGCAAACAGATGCACACAGCCTGGTGGGAAACACAGATCAGCTGGAGTGCGCCATTTGTTTTGGCACCATCATGCCAGGAGAGGGCGCCGTTTTAAGAGAGTGCCTTCATAGCTTCTGCAGGGACTGTCTGAAAGGGACCGTAGTGAACTGCCTGGACGCTGAGGTTTGTTGTCCTTATGGAGACAACGCTTATGCCTGTAACTGCAAACTCCAAGATCGAGAGATCAAATCTCTTCTCACTCAGGACGAGTACCAAAAATTCCTAGAACTGCGGCTGAATATCGCTGAGTCCCGCAGTGAGAACAGTTACCATTGCAAAACCCCGGACTGCGCTGGCTGGTGCATCTTCGAAGATGACGTTAACGAATTTAAGTGCGACATCTGCAATGAGACCAACTGCCTCCTCTGCAAGGCTATTCATAAAGGAATGAACTGCAAGGAGTACCAGGACGACCTACGTGTGAGAGCGCAGAACGATGAAGCGGCTCGGCAGACCACAGAGATGCTGGATCAACTGCTAAAGAATGGCGAGGCGATGAACTGTCCCAAATGTCAGGTGATCGTCCAGAAGAAAGACGGCTGTGACTGGATCTGTTGTCTAATGTGCAAAACCGAGATCTGCTGGGTGACCAAACAAGCCCGATGGGGACCTTTGGGTGCTGGAGACACATCAGGCGGATGCAAATGTCGAGTAAACGGAGTCCTTTGTCATCCGCAATGCCAGAACTGCCACTAA
>TCONS_00041170
GGAACTCGCCAGCCTGCAGTATGAGCAGCTTCTCACTCAGGACGAGTACCAAAAATTCCTAGAACTGCGGCTGAATATCGCTGAGTCCCGCAGTGAGAACAGTTACCATTGCAAAACCCCGGACTGCGCTGGCTGGTGCATCTTCGAAGATGACGTTAACGAATTTAAGTGCGACATCTGCAATGAGACCAACTGCCTCCTCTGCAAGGCTATTCATAAAGGAATGAACTGCAAGGAGTACCAGGACGACCTACGTGTGAGAGCGCAGAACGATGAAGCGGCTCGGCAGACCACAGAGATGCTGGATCAACTGCTAAAGAATGGCGAGGCGATGAACTGTCCCAAATGTCAGGTGATCGTCCAGAAGAAAGACGGCTGTGACTGGATCTGTTGTCTAATGTGCAAAACCGAGATCTGCTGGGTGACCAAACAAGCCCGATGGGGACCTTTGGGTGCTGGAGACACATCAGGCGGATGCAAATGTCGAGTAAACGGAGTCCTTTGTCATCCGCAATGCC
>TCONS_00041171
ctTTATTTCAGTCTAATTAAAGTCAacattagattttacatttatagttagatagatacatagatttaaatactaaaataaaattataataataaacaaaataactttttgtttttgctttctttttaaaCAAGCTTTCAAGATTAAAGTATGGCTGCTCTTGATGCCTCTAGAAATGTAACGGAAGCGGAGGATGCCGCTCGACTTCTTAGTGACGCCATCAACTCCAGAGACAAAGATGAAGCAACTAAATACCTGAATCAACTTCTGGATCTGAAACTCCCAGTGAGCGTCAAAATTAATCCAGATGCATATTCTCAAGACAACATCAGATTAAGAGTTGGAGTGGCTGATGCTGAATCAGAACATCACATCCCAATAACAGTGATGGTACCAGTTTACATGACAATATCCGAGCTGAAGGAAAAGATCAACGGTGACTATGGCTTCCATCCGTCTCTCCAGCGCTGGGTGATCGGGAAGCGTCTCG
>TCONS_00042343
GAGACTTTCCTGACTTCCTTGTGAAGCTTCGTTTCACTTTTCTTTCCACAAATTTCTGATTGTGACAAGAGCACGGATGGTTTTATCACCACGTACTATAACCATAAACACAACACGAAGCGTGTTTTAAACGTTTGTCCTATGGTTGAAATGTAACGGAAGCGGAGGATGCCGCTCGACTTCTTAGTGACGCCATCAACTCCAGAGACAAAGATGAAGCAACTAAATACCTGAATCAACTTCTGGATCTGAAACTCCCAGTGAGCGTCAAAATTAATCCAGATGCATATTCTCAAGACAACATCAGATTAAGAGTTGGAGTGGCTGATGCTGAATCAGAACATCACATCCCAATAACAGTGATGGTACCAGTTTACATGACAATATCCGAGCTGAAGGAAAAGATCAACGGTGACTATGGCTTCCATCCGTCTCTCCAGCGCTGGGTGATCGGGAAGCGTCTCG
>TCONS_00041172
AAACATCTTGTCTGTGTATTTTCTTAGCAAAGAATCGCGTACCCAACATCGCAAAAACACTACTTTCatagttttatttctttatttagagGTAAAAGGGTCAAATTAATGGATTGAGGACGAAGAGAGTGAAGAACTTGCAGTGTTTTGCTTCACAACACCTCATATCAGGAGCCACAGCTTTCAAGATTAAAGTATGGCTGCTCTTGATGCCTCTAGAAATGTAACGGAAGCGGAGGATGCCGCTCGACTTCTTAGTGACGCCATCAACTCCAGAGACAAAGATGAAGCAACTAAATACCTGAATCAACTTCTGGATCTGAAACTCCCAGTGAGCGTCAAAATTAATCCAGATGCATATTCTCAAGACAACATCAGATTAAGAGTTGGAGTGGCTGATGCTGAATCAGAACATCACATCCCAATAACAGTGATGGTACCAGTTTACATGACAATATCCGAGCTGAAGGAAAAGATCAACGGTGACTATGGC
>TCONS_00041173
GAGACTTTCCTGACTTCCTTGTGAAGCTTCGTTTCACTTTTCTTTCCACAAATTTCTGATTGTGACAAGAGCACGGATGGTTTTATCACCACGTACTATAACCATAAACACAACACGAAGCGTGTTTTAAACGTTTGTCCTATGGTTGAAATGTAACGGAAGCGGAGGATGCCGCTCGACTTCTTAGTGACGCCATCAACTCCA

Function

symbol description
rbck1 Predicted to enable ubiquitin binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be part of LUBAC complex. Is expressed in pharyngeal arch. Human ortholog(s) of this gene implicated in glycogen storage disease. Orthologous to human RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1).

GO:

id name namespace
GO:0097039 protein linear polyubiquitination biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0071797 LUBAC complex cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
ko04217 Necroptosis
ko04621 NOD-like receptor signaling pathway
ko05131 Shigellosis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040704-3 Predicted to enable ubiquitin binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be part of LUBAC complex. Is expressed in pharyngeal arch. Human ortholog(s) of this gene implicated in glycogen storage disease. Orthologous to human RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1).

Ensembl:

ensembl_id ENSDARG00000031954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041168 False 2629 mRNA 0.42 13 10145098 10158038
TCONS_00041169 False 1571 mRNA 0.49 12 10146083 10156581
TCONS_00041170 False 518 mRNA 0.52 5 10146097 10152629
TCONS_00041171 False 490 lncRNA 0.38 4 10153672 10156708
TCONS_00042343 False 465 lncRNA 0.44 5 10153672 10158106
TCONS_00041172 False 493 mRNA 0.41 5 10153715 10165446
TCONS_00041173 True 204 processed_transcript 0.43 3 10156402 10158106

Neighbor

gene id symbol gene type direction distance location
XLOC_020917 bloc1s1 coding downstream 17154 10123729 ~ 10127944 (-)
XLOC_020916 gls2b coding downstream 23218 10098446 ~ 10121880 (-)
XLOC_020915 si:dkey-102c8.2 coding downstream 58652 10085572 ~ 10086446 (-)
XLOC_020914 BX324213.1 coding downstream 65429 10076578 ~ 10079669 (-)
XLOC_020913 si:ch211-222k6.2 coding downstream 89354 10054336 ~ 10055744 (-)
XLOC_020919 NA coding upstream 51346 10216792 ~ 10222529 (-)
XLOC_020920 stab1 coding upstream 115974 10281420 ~ 10354381 (-)
XLOC_020921 nisch coding upstream 195724 10361170 ~ 10397680 (-)
XLOC_020922 nol8 coding upstream 259549 10424995 ~ 10440688 (-)
XLOC_020923 ogna coding upstream 289157 10454603 ~ 10459880 (-)
XLOC_020903 BX539307.3 non-coding downstream 318629 9824521 ~ 9826469 (-)
XLOC_020902 NA non-coding downstream 371055 9752170 ~ 9774043 (-)
XLOC_020901 BX664625.4 non-coding downstream 430767 9714214 ~ 9714331 (-)
XLOC_020897 NA non-coding downstream 829926 9278778 ~ 9315172 (-)
XLOC_020935 BX465868.1 non-coding upstream 492572 10658018 ~ 10660997 (-)
XLOC_020936 BX465868.3 non-coding upstream 502412 10667858 ~ 10667974 (-)
XLOC_020937 BX465868.2 non-coding upstream 507723 10673169 ~ 10675595 (-)
XLOC_020938 NA non-coding upstream 541329 10706775 ~ 10711531 (-)

Expression


Co-expression Network