Gene
RNA
| Item | Value |
|---|---|
| gene id | G113518 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 11977825 ~ 11979473 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: putative proline-rich protein 21 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU129824 | False | 344 | lncRNA | 0.36 | 3 | 11977825 | 11979473 |
| TU129825 | True | 507 | lncRNA | 0.29 | 2 | 11977825 | 11978387 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110510416 | LOC106596421 | coding | upstream | 519394 | 11416206 ~ 11459325 (+) |
| fbxo43 | fbxo43 | coding | upstream | 564112 | 11402943 ~ 11413713 (+) |
| echdc1 | echdc1 | coding | upstream | 580517 | 11392942 ~ 11397308 (+) |
| soga3a | LOC106593623 | coding | upstream | 604825 | 11328026 ~ 11373000 (+) |
| LOC110520740 | LOC106592347 | coding | upstream | 653018 | 11307174 ~ 11324807 (+) |
| LOC110511179 | NA | coding | downstream | 320066 | 12299517 ~ 12300453 (+) |
| LOC118944185 | NA | coding | downstream | 492767 | 12430935 ~ 12555437 (+) |
| LOC110513835 | nipal2 | coding | downstream | 582864 | 12562337 ~ 12616197 (+) |
| LOC110510520 | rida | coding | downstream | 694612 | 12674085 ~ 12680150 (+) |
| spag1b | LOC106592835 | coding | downstream | 737101 | 12716574 ~ 12776832 (+) |
| G113504 | NA | non-coding | upstream | 23158 | 11953364 ~ 11954667 (+) |
| G113505 | NA | non-coding | upstream | 23681 | 11953805 ~ 11954144 (+) |
| G113503 | NA | non-coding | upstream | 24770 | 11952280 ~ 11953055 (+) |
| G113502 | NA | non-coding | upstream | 25776 | 11951679 ~ 11952049 (+) |
| G113489 | NA | non-coding | upstream | 60276 | 11916669 ~ 11917549 (+) |
| G113526 | NA | non-coding | downstream | 24255 | 12003728 ~ 12004165 (+) |
| G113536 | NA | non-coding | downstream | 60625 | 12040098 ~ 12041107 (+) |
| G113539 | NA | non-coding | downstream | 75798 | 12055271 ~ 12055699 (+) |
| G113543 | NA | non-coding | downstream | 82246 | 12061719 ~ 12062385 (+) |
| G113552 | NA | non-coding | downstream | 99195 | 12078668 ~ 12079653 (+) |
| G113396 | NA | other | upstream | 268048 | 11708603 ~ 11709777 (+) |
| G113313 | LOC102781083 | other | upstream | 495084 | 11477976 ~ 11482741 (+) |
| G113285 | NA | other | upstream | 562647 | 11414931 ~ 11415178 (+) |
| elovl4a | LOC106606161 | other | upstream | 704825 | 11260912 ~ 11275480 (+) |
| fbxo32 | fbxo32 | other | upstream | 734756 | 11227497 ~ 11243074 (+) |
| G114243 | NA | other | downstream | 740935 | 12720408 ~ 12720693 (+) |
| G114244 | NA | other | downstream | 741257 | 12720730 ~ 12721315 (+) |
| G114263 | NA | other | downstream | 782759 | 12762232 ~ 12762827 (+) |
| G114323 | NA | other | downstream | 969887 | 12949360 ~ 12964930 (+) |
| LOC110520769 | LOC106593286 | other | downstream | 1642504 | 13604304 ~ 13623972 (+) |
