G113552



Basic Information


Item Value
gene id G113552
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12078668 ~ 12079653 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU129864
gagaggagaggagacttgggactgggaagagagaggagaggagacttgggactgggaaaggagaggagaggagagaaaaggaagcAGGACCTCGTCAACACAACAGTAATATAAAGTAGAGAACACTGAGTAATGGACAGAACCATTCTGATAACTTCCATGGATCCAACaccagacagggaggaggaggagcagagagcacCATTAAAACAATGTCCTGTTTCTTTAAAAGCTTCGGGCTGATCTAATCCAACATCAGTCTGTCAAGGAGACGATAAAGACGGTGTCTGAAGCAATGTGGATTTTAGTCATGTTGATATGTACCAGTCATGTAGATATGTACCAGTCATGTAGATATGTACCAGTCATGTAGATATGTACCAGTCATGTTGATATGTACCAGTCATGTTGATATGTACCAGTCATGTAGATATGTACCAGTCATGTTGATATGTACCAGTCATGTTGATATGTACCAGTCATGTTGATATGTACCAGTCATGTAGATATGTACCAGTCATGTTGATATGTACCAGTCATGTAGATATGTACCAGTCGTGTTGATATGTACCAGTCATGTAGATA

Function


NR:

description
PREDICTED: adhesive plaque matrix protein-like, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU129864 True 585 lncRNA 0.52 6 12078668 12079653

Neighbor


gene id symbol gene type direction distance location
LOC110510416 LOC106596421 coding upstream 620237 11416206 ~ 11459325 (+)
fbxo43 fbxo43 coding upstream 664955 11402943 ~ 11413713 (+)
echdc1 echdc1 coding upstream 681360 11392942 ~ 11397308 (+)
soga3a LOC106593623 coding upstream 705668 11328026 ~ 11373000 (+)
LOC110520740 LOC106592347 coding upstream 753861 11307174 ~ 11324807 (+)
LOC110511179 NA coding downstream 219886 12299517 ~ 12300453 (+)
LOC118944185 NA coding downstream 392587 12430935 ~ 12555437 (+)
LOC110513835 nipal2 coding downstream 482684 12562337 ~ 12616197 (+)
LOC110510520 rida coding downstream 594432 12674085 ~ 12680150 (+)
spag1b LOC106592835 coding downstream 636921 12716574 ~ 12776832 (+)
G113543 NA non-coding upstream 16283 12061719 ~ 12062385 (+)
G113539 NA non-coding upstream 22969 12055271 ~ 12055699 (+)
G113536 NA non-coding upstream 37561 12040098 ~ 12041107 (+)
G113526 NA non-coding upstream 74503 12003728 ~ 12004165 (+)
G113518 NA non-coding upstream 99195 11977825 ~ 11979473 (+)
G113557 NA non-coding downstream 7735 12087388 ~ 12089042 (+)
G113559 NA non-coding downstream 9824 12089477 ~ 12090494 (+)
G113561 NA non-coding downstream 14176 12093829 ~ 12094222 (+)
G113570 NA non-coding downstream 32055 12111708 ~ 12112197 (+)
G113574 NA non-coding downstream 42281 12121934 ~ 12122983 (+)
G113396 NA other upstream 368891 11708603 ~ 11709777 (+)
G113313 LOC102781083 other upstream 595927 11477976 ~ 11482741 (+)
G113285 NA other upstream 663490 11414931 ~ 11415178 (+)
elovl4a LOC106606161 other upstream 805668 11260912 ~ 11275480 (+)
fbxo32 fbxo32 other upstream 835599 11227497 ~ 11243074 (+)
G114243 NA other downstream 640755 12720408 ~ 12720693 (+)
G114244 NA other downstream 641077 12720730 ~ 12721315 (+)
G114263 NA other downstream 682579 12762232 ~ 12762827 (+)
G114323 NA other downstream 869707 12949360 ~ 12964930 (+)
LOC110520769 LOC106593286 other downstream 1542324 13604304 ~ 13623972 (+)

Expression



Co-expression Network