G113557


Basic Information

Item Value
gene id G113557
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12087388 ~ 12089042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU129869
ccactgACTAGATGGACTGCTCCTCTACCTGGTCTatccacatctctctgtcctctacctggTCTATCCACATCTCTCTGAACCTGATTCATGgctctgttctgttccactgACTAGATGGACTGCTCCTCTACCTGGTCTatccacatctctctgtcctctacctggTCTATCCACATCTCTCTGAACCTGATTCATGgctctgttctgttccactgACTAGATGGACTGCTCCTCTACCTGGTCTatccacatctctctgtcctctacctggtctatccacatctctctgttctctacctGGTCTATCCACATCTCTATGTCCTCTAACTGGTCTATCCACATCTCTCTGAACCTGATTCATGgctctgttctgttccactgACTAGATGGACTGCTCCTCTACCTGGTCTATCCACATCTCTCTGAACCTGATTCatggctctgttctgttctaattACTAGATGGACTGCTCCTCTACCTGGTCTatccacatctctctgtcctctacctggTCTATCCACATCTCTCTGAACCTGATTCATGgctctgttctgttccactgACTAGATGGACTGCTCCTCTACCTGGTCTatccacatctctctgtcctctacctggTCTATCCACATCTCTCTGAACCTGATTCATGgctctgttctgttccactgACTAGATGGACTGCTCCTCTACCTGGTCTatccacatctctctgtcctctacctggtctatccacatctctcagtcctctacctggtctatccacatctctctgtcctctacctggTCTATCCACATCTCTCTGAACCTGATTCATGgctctgttctgttccactgACTAGATGGACTGCTCCTCTACCTGGTCTATCCACATCTATCTGTCCTCTACCTGGTCTATCGCTCCTCTACCTGGTCTatccacatctctctgtcctctacctggtctatccacatctctctgtcctctacctggTCTATCCACATCTCTCTGAACCTGATTCATGgctctgttctgttccactgACTAGATGGACTGCTCCTCTACCTGGTCTatccacatctctctgtcctctacctggtctctctgtcctctacctggtctatccacatctctctgtcctctacctggtctctctgtcctctacctggtctctctgtcctctacctggT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129869 True 1171 lncRNA 0.46 2 12087388 12089042

Neighbor

gene id symbol gene type direction distance location
LOC110510416 LOC106596421 coding upstream 628957 11416206 ~ 11459325 (+)
fbxo43 fbxo43 coding upstream 673675 11402943 ~ 11413713 (+)
echdc1 echdc1 coding upstream 690080 11392942 ~ 11397308 (+)
soga3a LOC106593623 coding upstream 714388 11328026 ~ 11373000 (+)
LOC110520740 LOC106592347 coding upstream 762581 11307174 ~ 11324807 (+)
LOC110511179 NA coding downstream 210497 12299517 ~ 12300453 (+)
LOC118944185 NA coding downstream 383198 12430935 ~ 12555437 (+)
LOC110513835 nipal2 coding downstream 473295 12562337 ~ 12616197 (+)
LOC110510520 rida coding downstream 585043 12674085 ~ 12680150 (+)
spag1b LOC106592835 coding downstream 627532 12716574 ~ 12776832 (+)
G113552 NA non-coding upstream 7735 12078668 ~ 12079653 (+)
G113543 NA non-coding upstream 25003 12061719 ~ 12062385 (+)
G113539 NA non-coding upstream 31689 12055271 ~ 12055699 (+)
G113536 NA non-coding upstream 46281 12040098 ~ 12041107 (+)
G113526 NA non-coding upstream 83223 12003728 ~ 12004165 (+)
G113559 NA non-coding downstream 435 12089477 ~ 12090494 (+)
G113561 NA non-coding downstream 4787 12093829 ~ 12094222 (+)
G113570 NA non-coding downstream 22666 12111708 ~ 12112197 (+)
G113574 NA non-coding downstream 32892 12121934 ~ 12122983 (+)
G113577 NA non-coding downstream 56113 12145155 ~ 12145796 (+)
G113396 NA other upstream 377611 11708603 ~ 11709777 (+)
G113313 LOC102781083 other upstream 604647 11477976 ~ 11482741 (+)
G113285 NA other upstream 672210 11414931 ~ 11415178 (+)
elovl4a LOC106606161 other upstream 814388 11260912 ~ 11275480 (+)
fbxo32 fbxo32 other upstream 844319 11227497 ~ 11243074 (+)
G114243 NA other downstream 631366 12720408 ~ 12720693 (+)
G114244 NA other downstream 631688 12720730 ~ 12721315 (+)
G114263 NA other downstream 673190 12762232 ~ 12762827 (+)
G114323 NA other downstream 860318 12949360 ~ 12964930 (+)
LOC110520769 LOC106593286 other downstream 1532935 13604304 ~ 13623972 (+)

Expression


Co-expression Network