G113644 (LOC106572245)


Basic Information

Item Value
gene id G113644
gene name LOC106572245
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12312808 ~ 12314280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU130002
gtgagggttgcaactgaggacagacgatttgtaTGCGCTTCAGCAcacggtggtcccgttctgtgagcttgtgtggtctaccacttcgtggctgagccgttgttgctcctagacgtttccacttcagaataacagcacttacagttgaccggggcggctctagcagggcagaaatttgacaaactgacttgttggaaaggtggcatcttatgacggtgccacattgaaagtcactgagctcttcagtaaggccattctactggcaatgtttgtctatggagattgcatggcagtgtgctcgatttatacacctgtcagcaacaagtgtggctgaaatagcagaatccactaattttagaataatgtgaagacatcaaaaatatgaaattacacatatggaatcatgtagggaccaaaacagtgtagtagtagtggtggtagtagtagtggtggtggtagtagtggtaggtgagtagtagtggt

Function

NR:

description
PREDICTED: uncharacterized protein LOC109614805

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130002 True 483 lncRNA 0.41 2 12312808 12314280

Neighbor

gene id symbol gene type direction distance location
LOC110511179 NA coding upstream 12851 12299517 ~ 12300453 (+)
LOC110510416 LOC106596421 coding upstream 854377 11416206 ~ 11459325 (+)
fbxo43 fbxo43 coding upstream 899095 11402943 ~ 11413713 (+)
echdc1 echdc1 coding upstream 915500 11392942 ~ 11397308 (+)
soga3a LOC106593623 coding upstream 939808 11328026 ~ 11373000 (+)
LOC118944185 NA coding downstream 157960 12430935 ~ 12555437 (+)
LOC110513835 nipal2 coding downstream 248057 12562337 ~ 12616197 (+)
LOC110510520 rida coding downstream 359805 12674085 ~ 12680150 (+)
spag1b LOC106592835 coding downstream 402294 12716574 ~ 12776832 (+)
LOC110525149 LOC106589684 coding downstream 599351 12913631 ~ 12916798 (+)
G113634 LOC106591507 non-coding upstream 4961 12301209 ~ 12307847 (+)
G113619 NA non-coding upstream 38046 12274294 ~ 12274762 (+)
G113593 NA non-coding upstream 108620 12203682 ~ 12204188 (+)
G113589 NA non-coding upstream 119004 12189257 ~ 12193804 (+)
G114105 NA non-coding downstream 23597 12337877 ~ 12338131 (+)
G114125 NA non-coding downstream 43585 12357865 ~ 12358192 (+)
G114135 NA non-coding downstream 68530 12382810 ~ 12385066 (+)
G114140 NA non-coding downstream 92728 12407008 ~ 12408920 (+)
G114144 NA non-coding downstream 97764 12412044 ~ 12414925 (+)
G113396 NA other upstream 603031 11708603 ~ 11709777 (+)
G113313 LOC102781083 other upstream 830067 11477976 ~ 11482741 (+)
G113285 NA other upstream 897630 11414931 ~ 11415178 (+)
elovl4a LOC106606161 other upstream 1039808 11260912 ~ 11275480 (+)
fbxo32 fbxo32 other upstream 1069739 11227497 ~ 11243074 (+)
G114243 NA other downstream 406128 12720408 ~ 12720693 (+)
G114244 NA other downstream 406450 12720730 ~ 12721315 (+)
G114263 NA other downstream 447952 12762232 ~ 12762827 (+)
G114323 NA other downstream 635080 12949360 ~ 12964930 (+)
LOC110520769 LOC106593286 other downstream 1307697 13604304 ~ 13623972 (+)

Expression


Co-expression Network