G114391


Basic Information

Item Value
gene id G114391
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12588120 ~ 12591840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU131243
GTGTTGTTTCTCATAGTACTGTACACGGCCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACTGCCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCCTAAACACTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCCTATAACACTAGTGTTGTATCTCATAGTACTGTACAGGGTCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCATTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTAAACACTAGTGTTGTATCTCATAGTACTGTACACGGTCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTACACGGCCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTACACGGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTATAACACTAGTGTTGTATCTCatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTATAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTAAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTATACGGC
>TU131244
CTATGACTGAAACACAGCCCAGTGGTGCGATGAGGGAGGCCGGGGCGAAGCCGTAGGCTGCGAAGTTCCCCAGCTCCCCTAGTCCCATCAGAACCACGCCACTCCACCACAGCACTGAGGTGTAGTAGGGCCCGGAGTCGCCGAGCTGGGACTGGCGCATGTGGGCGTATTTCTGACAGCGAGAGGACAGAGGGCACAGAGTCAAAAAGAACAGCACTTCTTTCACTGGTTAAGAGGAGCATTGGGAAAATACACAAATAATACAGTAGCTAACATAACATCAGTAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCATTAAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTATACGGTCTCCTAAAACACTAGTGTTGTTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTTTCTCATAGTACTGTACACAGCCTCCTATAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTATAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTTAGTGTTGTATCTCATAGTACTGCACACGGCCTCCTAAAACACTAGTGTTGTTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTATAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACGGCCTCCTAAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAACACTAGTGTTGTATCtcatagtactgtacacagtCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTACACAGCCTCCTAAAACACTAGTGTTGTATCTCATAGTACTGTATACGGC

Function

NR:

description
PREDICTED: NIPA-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131243 False 1101 lncRNA 0.40 2 12588120 12589443
TU131244 True 1302 lncRNA 0.61 2 12588120 12591840

Neighbor

gene id symbol gene type direction distance location
LOC118937718 LOC106590816 coding downstream 34601 12549299 ~ 12553519 (-)
LOC118944056 NA coding downstream 142963 12435469 ~ 12445157 (-)
osr2 LOC106591507 coding downstream 283170 12299928 ~ 12304950 (-)
LOC118937706 NA coding downstream 498691 12085564 ~ 12089429 (-)
LOC118937715 NA coding downstream 625526 11961554 ~ 11962594 (-)
LOC118944197 NA coding upstream 25666 12617506 ~ 12617694 (-)
pop1 LOC106561139 coding upstream 47862 12639702 ~ 12673874 (-)
LOC118937724 NA coding upstream 91218 12683058 ~ 12683775 (-)
LOC118937723 LOC106561136 coding upstream 91253 12683093 ~ 12715610 (-)
LOC110525147 LOC106570794 coding upstream 221810 12813650 ~ 12890396 (-)
G114389 NA non-coding downstream 9756 12577859 ~ 12578364 (-)
G114364 NA non-coding downstream 112351 12474320 ~ 12475769 (-)
G114362 NA non-coding downstream 121720 12464565 ~ 12466400 (-)
G114361 NA non-coding downstream 123962 12462746 ~ 12464158 (-)
G114359 NA non-coding downstream 132083 12455762 ~ 12456037 (-)
G114399 NA non-coding upstream 13131 12604971 ~ 12608944 (-)
G114401 NA non-coding upstream 26681 12618521 ~ 12619052 (-)
G114400 NA non-coding upstream 31449 12623289 ~ 12624052 (-)
G114404 NA non-coding upstream 33859 12625699 ~ 12626684 (-)
G114405 NA non-coding upstream 42909 12634749 ~ 12634983 (-)
G114390 NA other downstream 2980 12584027 ~ 12585140 (-)
LOC110513475 LOC106592216 other downstream 929452 11471939 ~ 12290710 (-)
G113733 LOC106606124 other downstream 1235379 11349342 ~ 11352741 (-)
G113720 NA other downstream 1262508 11323041 ~ 11325612 (-)
G113712 NA other downstream 1275462 11310843 ~ 11312658 (-)
G114402 NA other upstream 18829 12610669 ~ 12613680 (-)
G114424 NA other upstream 115987 12707827 ~ 12709315 (-)
G114442 NA other upstream 143474 12735314 ~ 12739157 (-)
LOC110507534 LOC106606051 other upstream 500252 13086169 ~ 13094428 (-)
LOC110513400 snrk other upstream 703993 13250306 ~ 13324680 (-)

Expression


Co-expression Network