G114410


Basic Information

Item Value
gene id G114410
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12674092 ~ 12680145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU131278
TTCATTTGTTTTGACTTTATTTTTAAACAGGAAGTGATGTTTTATTGGACCATCTTAACCAATGGAAATGATTCACTATACGCTGGTATTGTGATGGCACGTCATTTTATGGGACATGGGAGTTGTTGATTTTTTTCCTGTTCTGTCGCTGACGTTTAGGCTACATCAAGAGACCTCAGTCAGAGGGCCCAGAACAGCAACAGCTTCAATCTCTACAAGCccaccCCTGGGCAGAGCAGCGACCTGGTAGGCAGCCCTAGCTGGGAAGCTACTGCTGAAAAATGTTTTATAGACATCATTCACACTGACGAAGTCATTCATGTCAGCCAAAAGAACTGTGGTTTTCACGACACTGTCATATCCACACCCTGCTTCCTTCAGGATCTCCCCCATGTTTACCAGAGCCTGTTTGGTCTGAGCCTGGACCCCTCCCTCCACCAGCTGACCAGAGGCAGGGTCCATCCCCAGCTGGCCTGACACGTACATGGTCCTGTCCACCACCACCGCCTGGCTGTACGGCCCGATAGCTGCTGGCGCTTTAGTGGTGTTGATTATCTTCCTGATGATCGAAGACATGATTAGAATTGGACACAAAAAAAAGTCTTCACTTAAAACAAAGAAGTTCCTGCTCTGAAGCCCGTGGAGGTCTGAAATGACAGATCAGCTGGTAGAGCGCGTCTACTACCGTAAAGTCTCAACTAAACGGGCCTA
>TU131277
TTCATTTGTTTTGACTTTATTTTTAAACAGGAAGTGATGTTTTATTGGACCATCTTAACCAATGGAAATGATTCACTATACGCTGGTATTGTGATGGCACGTCATTTTATGGGACATGGGAGTTGTTGATTTTTTTCCTGTTCTGTCGCTGACGTTTAGGCTACATCAAGAGACCTCAGTCAGAGGGCCCAGAACAGCAACAGCTTCAATCTCTACAAGCccaccctgagagagagacacagagagagagagagagacagagacacacagagagaccgagacaaaAATAGCATTCAAGTACTTCTCAGGTTTGTGGTCAGTAACATCACATGGTTAGGTTCTGTATCGCCATGGAAACAGTGTAAGGAGACGAAGCGTCAGATCCTCACCCTGGGCAGAGCAGCGACCTGGTAGGCAGCCCTAGCTGGGAAGCTACTGCTGAAAAC
>TU131279
TTCATTTGTTTTGACTTTATTTTTAAACAGGAAGTGATGTTTTATTGGACCATCTTAACCAATGGAAATGATTCACTATACGCTGGTATTGTGATGGCACGTCATTTTATGGGACATGGGAGTTGTTGATTTTTTTCCTGTTCTGTCGCTGACGTTTAGGCTACATCAAGAGACCTCAGTCAGAGGGCCCAGAACAGCAACAGCTTCAATCTCTACAAGCccaccctgagagagagacacagagacagagacacacagagagaccgagacaaaAATAGCATTCAAGTACTTCTCAGGTTTGTGGTCAGTAACATCACATGGTTAGGTTCTGTATCGCCATGGAAACAGTGTAAGGAGACGAAGCGTCAGATCCTCACCCTGGGCAGAGCAGCGACCTGGTAGGCAGCCCTAGCTGGGAAGCTACTGCTGAAAAC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU131278 False 711 lncRNA 0.48 6 12674092 12680145
TU131277 False 446 lncRNA 0.42 2 12679680 12680145
TU131279 True 434 lncRNA 0.45 2 12679680 12680145

Neighbor

gene id symbol gene type direction distance location
pop1 LOC106561139 coding downstream 218 12639702 ~ 12673874 (-)
LOC118944197 NA coding downstream 56398 12617506 ~ 12617694 (-)
LOC118937718 LOC106590816 coding downstream 120573 12549299 ~ 12553519 (-)
LOC118944056 NA coding downstream 228935 12435469 ~ 12445157 (-)
osr2 LOC106591507 coding downstream 369142 12299928 ~ 12304950 (-)
LOC118937724 NA coding upstream 2913 12683058 ~ 12683775 (-)
LOC118937723 LOC106561136 coding upstream 2948 12683093 ~ 12715610 (-)
LOC110525147 LOC106570794 coding upstream 133505 12813650 ~ 12890396 (-)
pabpc1a LOC106593394 coding upstream 244327 12924472 ~ 12934534 (-)
LOC118944179 NA coding upstream 245212 12925357 ~ 12925439 (-)
G114414 NA non-coding downstream 3589 12669799 ~ 12670503 (-)
G114413 NA non-coding downstream 22121 12650448 ~ 12651971 (-)
G114406 NA non-coding downstream 37092 12636763 ~ 12637000 (-)
G114405 NA non-coding downstream 39109 12634749 ~ 12634983 (-)
G114409 NA non-coding upstream 2634 12682779 ~ 12683911 (-)
G114433 NA non-coding upstream 38154 12718299 ~ 12718760 (-)
G114435 NA non-coding upstream 43317 12723462 ~ 12724722 (-)
G114436 NA non-coding upstream 43687 12723832 ~ 12725375 (-)
G114443 NA non-coding upstream 59097 12739242 ~ 12739759 (-)
G114402 NA other downstream 60412 12610669 ~ 12613680 (-)
G114390 NA other downstream 88952 12584027 ~ 12585140 (-)
LOC110513475 LOC106592216 other downstream 1015424 11471939 ~ 12290710 (-)
G113733 LOC106606124 other downstream 1321351 11349342 ~ 11352741 (-)
G113720 NA other downstream 1348480 11323041 ~ 11325612 (-)
G114424 NA other upstream 27682 12707827 ~ 12709315 (-)
G114442 NA other upstream 55169 12735314 ~ 12739157 (-)
LOC110507534 LOC106606051 other upstream 411947 13086169 ~ 13094428 (-)
LOC110513400 snrk other upstream 615688 13250306 ~ 13324680 (-)
G114812 NA other upstream 650603 13330748 ~ 13332506 (-)

Expression


Co-expression Network