G114220


Basic Information

Item Value
gene id G114220
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12681433 ~ 12682686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU130946
ACTGAATGGTTCATTTACACTCGATTTGGTACCTCATGTCCTACTGCATCGAGATCAGGACTCCTCCTCAAACAGACAGACTCATCATGAATCTATATATAGTGACATCATGTCCTACTGCATCGAGATCAGGACTCCTCTTCAAACAGACAAACTCATCATGAATCTATATATAGTGACATCACGTCCTACTGCATCGAGATCAGGAGGACACCTCAAACAGACAGACTCATCATGAATCTATATATAGTGACATTTTGAAACAAACAAGGTGAGAAAGAGGAGAACtaaacagactgaccaggtaaacgctatgatcacttgttaaatccactttaaaatcagtgtagatgaagggggaagAGACCAgttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagaccggttaaagaaggatttataaGCTTTtcgacagttgagacatggattgtgtgtggcTTTAAGAGCcgttgaacggggtatggtagtaggtggtagtaggtggtagtaggtggtagtaggtggtagtaggtgccaggcgccccggtttgaacagggtatggtagtaggtgccaggcgccccggtttgtgtcaagaactgcaacgctgctggggttttcac
>TU130948
ACTGAATGGTTCATTTACACTCGATTTGGTACCTCATGTCCTACTGCATCGAGATCAGGACTCCTCCTCAAACAGACAGACTCATCATGAATCTATATATAGTGACATCATGTCCTACTGCATCGAGATCAGGACTCCTCTTCAAACAGACAAACTCATCATGAATCTATATATAGTGACATCACGTCCTACTGCATCGAGATCAGGAGGACACCTCAAACAGACAGACTCATCATGAATCTATATATAGTGACATTTTGAAACAAACAAGGTGAGAAAGAGGAGAACtaaacagactgaccaggtaaacgctatgatcacttgttaaatccactttaaaatcagtgtagatgaagggggaagAGACCAgttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagaccggttaaagaaggatttataaGCTTTtcgacagttgagacatggattgtgtgtggcTTTAAGAGCcgttgaacggggtatggtagtaggtggtagtaggtggtagtaggtggtagtaggtggtagtaggtgccaggcgccccggtttgaacagggtatggtagtaggtgccaggcgccccggtttgtgtcaagaactgcaacgctgctggggttttcac
>TU130949
ACTGAATGGTTCATTTACACTCGATTTGGTACCTCATGTCCTACTGCATCGAGATCAGGACTCCTCCTCAAACAGACAGACTCATCATGAATCTATATATAGTGACATCATGTCCTACTGCATCGAGATCAGGACTCCTCTTCAAACAGACTCATCATGAATCTATATATAGTGACATTTTGAAACAAACAAGGTGAGAAAGAGGAGAACtaaacagactgaccaggtaaacgctatgatcacttgttaaatccactttaaaatcagtgtagatgaagggggaagAGACCAgttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagaccggttaaagaaggatttataaGCTTTtcgacagttgagacatggattgtgtgtggcTTTAAGAGCcgttgaacggggtatggtagtaggtgccaggcgccccggtttgaacaggggtatggtagtaggtgccaggcgccccggtttgtgtcaagaactgcaacgctgctggggttttcac
>TU130950
ACTGAATGGTTCATTTACACTCGATTTGGTACCTCATGTCCTACTGCATCGAGATCAGGACTCCTCCTCAGACAGACTCATCATGAATCTATATATAGTGACATTTTGAAACAAACAAGGTGAGAAAGAGGAGAACtaaacagactgaccaggtaaacgctatgatcacttgttaaatccactttaaaatcagtgtagatgaagggggaagAGACCAgttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagaccggttaaagaaggatttataaGCTTTtcgacagttgagacatggattgtgtgtggcTTTAAGAGCcgttgaacggggtatggtagtaggtgccaggcgccccggtttgaacagggtatggtagtaggtgccaggcgccccggtttgaacaggggtatggtagtaggtgccaggcgccccggtttgaacagggtatg
>TU130951
ACTGAATGGTTCATTTACACTCGATTTGGTACCTCATGTCCTACTGCATCGAGATCAGGACTCCTCATCATGAATCTATATATAGTGACATCACGTCCTACTGCATCGAGATCAGGAGGACACCTCAAACAGACAGACTCATCATGAATCTATATATAGTGACATTTTGAAACAAACAAGGTGAGAAAGAGGAGAACtaaacagactgaccaggtaaacgctatgatcacttgttaaatccactttaaaatcagtgtagatgaagggggaagAGACCAgttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagaccggttaaagaaggatttataaGCTTTtcgacagttgagacatggattgtgtgtggcTTTAAGAGCcgttgaacggggtatggtagtaggtgccaggcgccccggtttgaacaggggtatggtagtaggtgccaggcgccccggtttgtgtcaagaactgcaacgctgctggggttttcac
>TU130952
ACTGAATGGTTCATTTACACTCGATTTGGTACCTCATGTCCTACTGCATCGAGATCAGGACTCCTCCTCAAACAGACTCATCATGAATCTATATATAGTGACATTTTGAAACAAACAAGGTGAGAAAGAGGAGAACtaaacagactgaccaggtaaacgctatgatcacttgttaaatccactttaaaatcagtgtagatgaagggggaagAGACCAgttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagaccagttaaaatcagtgtagatgaagaggaagagaccagttaaaatcagtgtagatgaagaggaagagaccAGTTAaaatcattgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagagacaggttaaaatcagtgtagatgaaggggaagaccggttaaagaaggatttataaGCTTTtcgacagttgagacatggattgtgtgtggcTTTAAGAGCcgttgaacggggtatggtagtaggtggtagtaggtggtagtaggtggtagtaggtggtagtaggtgccaggcgccccggtttgaacagggtatggtagtaggtgccaggcgccccggtttgtgtcaagaactgcaacgctgctggggttttcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130946 False 958 lncRNA 0.42 4 12681433 12682686
TU130948 False 754 lncRNA 0.44 4 12681433 12682686
TU130949 False 909 lncRNA 0.42 4 12681433 12682686
TU130950 False 613 lncRNA 0.42 4 12681433 12682587
TU130951 False 896 lncRNA 0.42 4 12681433 12682686
TU130952 True 874 lncRNA 0.42 5 12681433 12682686

Neighbor

gene id symbol gene type direction distance location
LOC110510520 rida coding upstream 1283 12674085 ~ 12680150 (+)
LOC110513835 nipal2 coding upstream 65236 12562337 ~ 12616197 (+)
LOC118944185 NA coding upstream 209003 12430935 ~ 12555437 (+)
LOC110511179 NA coding upstream 381476 12299517 ~ 12300453 (+)
LOC110510416 LOC106596421 coding upstream 1223002 11416206 ~ 11459325 (+)
spag1b LOC106592835 coding downstream 33888 12716574 ~ 12776832 (+)
LOC110525149 LOC106589684 coding downstream 230945 12913631 ~ 12916798 (+)
LOC118937726 NA coding downstream 244135 12926821 ~ 12927702 (+)
LOC110507515 LOC106575761 coding downstream 364193 13046879 ~ 13061306 (+)
LOC118936508 ano10 coding downstream 510459 13193145 ~ 13241855 (+)
G114217 NA non-coding upstream 7515 12673659 ~ 12673918 (+)
G114210 NA non-coding upstream 22921 12657714 ~ 12658512 (+)
G114209 NA non-coding upstream 23797 12657259 ~ 12657636 (+)
G114208 NA non-coding upstream 24793 12656309 ~ 12656640 (+)
G114199 NA non-coding upstream 40284 12640691 ~ 12641149 (+)
G114221 NA non-coding downstream 58 12682744 ~ 12685867 (+)
G114228 NA non-coding downstream 13494 12696180 ~ 12696433 (+)
G114234 NA non-coding downstream 33247 12715933 ~ 12716189 (+)
G114248 NA non-coding downstream 47984 12730670 ~ 12731081 (+)
G113396 NA other upstream 971656 11708603 ~ 11709777 (+)
G113313 LOC102781083 other upstream 1198692 11477976 ~ 11482741 (+)
G113285 NA other upstream 1266255 11414931 ~ 11415178 (+)
elovl4a LOC106606161 other upstream 1408433 11260912 ~ 11275480 (+)
fbxo32 fbxo32 other upstream 1438364 11227497 ~ 11243074 (+)
G114243 NA other downstream 37722 12720408 ~ 12720693 (+)
G114244 NA other downstream 38044 12720730 ~ 12721315 (+)
G114263 NA other downstream 79546 12762232 ~ 12762827 (+)
G114323 NA other downstream 266674 12949360 ~ 12964930 (+)
LOC110520769 LOC106593286 other downstream 939291 13604304 ~ 13623972 (+)

Expression


Co-expression Network