XLOC_002093


Basic Information

Item Value
gene id XLOC_002093
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21917877 ~ 21945344 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005881
AGATCTATTCTGTTCAATTCAATCCGGATTCTCCCTCTTCTGGCCTCTTTGCGAACTAAATCAGCCTCATATTCATCATTGTTAATCTTGATTTTCACTGAAGGCTGCCGATTCTGAAAGGCTTGTTCCAAGTCAAAATTGGTCAACAGGTCAAAGTTTTCGAATCTCTGCCCATTCTCCTGATACTGCCATTTAACTACAGCTCTGATCATTAATGCTTCACGTCTTCTGTTTTCATTTCTTTCCACCTTGCGGATCATGTCCCGAACGCGACTCTCTGCAGTGTGAACGTCTCTTGTCAGACCCTGCAATGTAACGACAGAGTCTTGGCCTTTCTTCTCTAGTTTGAAACTGACTGTAAGTTCCTTCTGCATGGCATTCAGCATTTCTACATCCTCTCTGGTGAAATGAGCAATGGCTGGATCACGGATTGGGTTGGTCAAATGCTCCCGAATTATCAAATTGTTGATCATTTCCTTGGCTTCACTCAAGTCCTGCGGTGTCTCTCCACACAGCTGAAACACAGCCGGCTCAATATCTTCACTCACCATCACAAACTCTTCACTTGGAGGAGTTTCTGAACTTCCCCATGAAAAAAAGTCTACATGTTTGATAGAGAAACAGATAGATTTataatgctttatttttgtttctatttAAACGTATTCACAAAAATTTTACTCTTTACTAACCTTTAAGTTTGGTTAACAGACCTCTATCCTCTTCTACTTTCTCACCAGATCTTCTGACCATACTTTGGTGGAAATGTGACAGCATGCTCGCCTGGAATATAAGGAACTTCACAACCTTTACATGCACCGGTTTCTTCTTCTTCACAAAGTCAACAACTGCATCAACCATTGCATCTGCAACATCACCAGGTTCCGCACCACCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005881 True 897 lncRNA 0.42 2 21917877 21945344

Neighbor

gene id symbol gene type direction distance location
XLOC_002090 hrh2b coding upstream 8181 21899753 ~ 21909696 (+)
XLOC_002091 NA coding upstream 11500 21906152 ~ 21906377 (+)
XLOC_002089 cbln17 coding upstream 47420 21867307 ~ 21870457 (+)
XLOC_002088 NA coding upstream 172372 21745262 ~ 21745505 (+)
XLOC_002087 pcdh1g14 coding upstream 188631 21726853 ~ 21729246 (+)
XLOC_002095 BX005027.1 coding downstream 35203 21980547 ~ 21980665 (+)
XLOC_002096 kcnip1b coding downstream 58406 22003750 ~ 22031921 (+)
XLOC_002097 npm1a coding downstream 89133 22034477 ~ 22045119 (+)
XLOC_002098 NA coding downstream 189189 22134533 ~ 22139340 (+)
XLOC_002099 NA coding downstream 278859 22224203 ~ 22263265 (+)
XLOC_002085 CT737184.1 non-coding upstream 243419 21670831 ~ 21674458 (+)
XLOC_002081 NA non-coding upstream 374315 21542521 ~ 21543562 (+)
XLOC_002077 BX465186.1 non-coding upstream 512906 21397320 ~ 21404971 (+)
XLOC_002100 NA non-coding downstream 308000 22253344 ~ 22273862 (+)
XLOC_002101 NA non-coding downstream 330569 22275913 ~ 22279448 (+)

Expression


Co-expression Network