XLOC_020932 (si:dkey-42i9.8)


Basic Information

Item Value
gene id XLOC_020932
gene name si:dkey-42i9.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10586296 ~ 10591876 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041191
AGACTGGTTACGCCCACGCCTCCGAAGAAAAGCGAAGTGAAGAGCAGCATGGCTTCCAGCATCTCGGTTGTTCTCCTGCTGTTCGCGGGTTTATTCCAGAATATTGTCAGCTATGAAGACTGTTACAGTGTTATTAAGAATGAATTTGTAGTCTGTGGTTGGTTGACCAACAATTTCTGCTGTGGGACCTGTAATGGCACTTACTGCTGCGATGACCCTCATAAAAGAATCACCAGAAACGAATTAGACGACTGTTTTTGGAAAGACTTCAAGGCTTTGGAAGGAAAGTTGAATTTTCTTCAAccaaagaaaatcacaactgacAACACGTGTGTCGCAGTTTATTCCTCTTTAATTGGAGTTGTGGCCTTCATCGTTGTGTTCATCATCTGCTGGGTCTCTCCCTCCTGCTTTCTCCATAAGAGATTCAGAAATCCTGGATCTGTGTTGTCGACTTCTACATTCGTGACGACACAATGCCTTCCACAGCTTGACAGTAAGAACGGCCACTACCCTCCATACCAGCCTTTGTCAAATGACCCACCACACGGAGACCAACTAATGCCAACTGGATCTTTGAATGGACCACCACCATCATATCTGGATGCTGATGGAGGTCAGACTGTGGACCCTAAACAACCAGCAATGCAGATGGACTATACGTCGCTTCCATTAGCTGTAAACCCTGTTTATGTGGAATCACCCGGAATAACTAGAGTTCAGatgcccaagactggttactaaACCAACTCCAGTGTGTCTGAGATTGTAAACTTGTTGGATTGTAAATATATTGATTTGATTCATTAAATGTTACTCGCAAGTGTAAAGTTGACTTTCAGAGTCTGGAGTTGAAGAAACCAAACGTTTTGAACTTGTTCAGTTAATCTTTCAGTTTTAAAGCAGATGAAATTTTGAGTATAGttctttgtaaatgttttttttcttcagttttcttGGATCTAGacattaaaaacaatgttcaaaCTGCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-412 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SHISA5 (shisa family member 5).

Ensembl:

ensembl_id ENSDARG00000071541

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041191 True 992 mRNA 0.42 5 10586296 10591876

Neighbor

gene id symbol gene type direction distance location
XLOC_020931 si:dkey-42i9.16 coding downstream 105 10582222 ~ 10586191 (-)
XLOC_020930 si:dkey-42i9.7 coding downstream 6102 10575060 ~ 10580194 (-)
XLOC_020929 si:dkey-42i9.6 coding downstream 15547 10560686 ~ 10570749 (-)
XLOC_020928 si:dkey-42i9.4 coding downstream 44584 10540446 ~ 10541712 (-)
XLOC_020927 ippk coding downstream 47116 10516332 ~ 10539180 (-)
XLOC_020933 bap1 coding upstream 82 10591958 ~ 10605045 (-)
XLOC_020934 cyb561d2 coding upstream 47564 10639440 ~ 10641873 (-)
XLOC_020935 BX465868.1 coding upstream 66142 10658018 ~ 10660997 (-)
XLOC_020936 BX465868.3 coding upstream 75982 10667858 ~ 10667974 (-)
XLOC_020937 BX465868.2 coding upstream 81293 10673169 ~ 10675595 (-)
XLOC_020919 NA non-coding downstream 363767 10216792 ~ 10222529 (-)
XLOC_020914 BX324213.1 non-coding downstream 506627 10076578 ~ 10079669 (-)
XLOC_020903 BX539307.3 non-coding downstream 759827 9824521 ~ 9826469 (-)
XLOC_020902 NA non-coding downstream 812253 9752170 ~ 9774043 (-)
XLOC_020901 BX664625.4 non-coding downstream 871965 9714214 ~ 9714331 (-)
XLOC_020938 NA non-coding upstream 114899 10706775 ~ 10711531 (-)
XLOC_020940 BX908398.1 non-coding upstream 172057 10763933 ~ 10764047 (-)

Expression


Co-expression Network