XLOC_020933 (bap1)


Basic Information

Item Value
gene id XLOC_020933
gene name bap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10591958 ~ 10605045 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041192
GATGACGTCAAGTCCAGGCGACGGAGCTGCTCTTTATTGTGTTTACTAGCTGTCCCGATCGCCTTAAGATGAATCAAATATGTGCCAGAAAATGATCGTCATGGTTCTTTCTAATATTATGGATCGGTCAATGGTTTAACCGGGGGTTTTGGTGACTCTGAATTCGCAAAAATGAACAAAGGTTGGCTGGAGTTAGAAAGTGACCCGGGGTTGTTCACACTCCTGGTGGAGGACTTTGGCGTGAAAGGAGTTCAGGTGGAGGAGATTTATGATCTTCAGAGCAAATGTCAAAGTCCTGTATATGGCTTCATCTTTCTTTTCAAATGGATCGAGGAGCGAAGATCTCGGCGTAAAGTCTCCACACTGGTGGATGAAACCTCTGTTATCGATGACGACATTGTTAATGACATGTTTTTCGCTCATCAGTTGATCCCGAACTCCTGTGCGACTCATGCTCTTCTCAGCGTGCTCCTGAACTGCAGCGGTGTGGAGCTGGGAATGACTCTGAGCCGCATGAAGGCTTTCACCAAGGGCTTCAATCCTGAGAGTAAAGGTTACGCCATTGGAAACGCCCCAGAGCTGGCGAAAGCCCACAACAGCCATGCCAGGCCGGAGCCGCGGCATCTTCCGGAGAAACAGAACGGCATTAGCGCTGTGCGGACGATGGAGGCGTTTCATTTTGTCAGTTACGTGCCAATCAAAGACAGACTGTTTGAGCTAGATGGGCTGAAGGCGTATCCCATTGACCACGgACCATGGGGTGAGGATGAAGAGTGGACAGATAAAGCCAGACGGGTCATAATGGAGCGAATAGGACTGGCCACTGCTGGAGAGCCCTACCATGACATCCGGTTTAATCTCATGGCGGTGGTTCCAGATCGCAGGATAAAATACGAGTCCAAGTTGGACATCCTGAAGCGGAACAGGCAGATCATACTTGAAGGGCTCCAGCAGATTAGAGAGAAAAAAGTTATTCGGATGACTCAGCAAGAATCAGGCCAGGATCGTAAGCAGCAAGACTCCTCTTCTTCAGAAGACACGCCCCCTGTTGTCAAAAAGGAGGAGGTGCAAGAAACACCAATACCTTCAGGTGCCGAGCAGGCCACACCCACAGAAACTCAAGAAGGTGCTGCCTCTTTACCAAGTCCAGCTGGTAAAGTCAGATCCATGGCTAAACCCGCTttgccagcagggggcgctccaCCACCAGCCCCTCTACCTGCTCCAAGCACCAACACCATTGTGCAGCGTCTACCAGCCTTCCTGGACAATCACAACTACGCCAAATCCCCCATGCAGGAAGAGGAGGATCTTGCTGCAGGTGTGGGACGCTCACGCCCCCCTCAGCCCCCTTATTCTGATGATGAGGATGActatgatgatgaagaggaggagtgCAGCACTGCTGGTGTCACAAACAGCAGGGTTCGAAGAAAGTTGGGTCTGCGTACCCGTACCATGAGCCGCACTGCAGTGGGCGGAGTCGCAGCAATGGAGGGTCAACTAGCACTCAGTGTTTTAGCAGAGAAGCTCAAGAAGGAGGTTCAGCGGAAAGACGCCTTGGCCACAACTGGATCCACACCTCTGAACGTACGTACCGAGGGTCGGACAGGTGGCATCAGCATCACCTCGGCTTGCCAGCCGTCGCCCACCCCTAGTAACGAAAGCACGGACACAGCCTCCGAGATTGGTAGTGCATTCAACTCCCCACTGCGGTCACCAGCTCGATCACAGGCGACTACACGTCCCTCCAGCCCAGTGGCTTCCCATGTAGGCCGCGTGCTGTTTGGGGAAGAGGAGGGGCTGCCTAGGTTAGATGCCCGACACAATCGGGCTGTCCGAGACTTGGGGGTGCTCGTGAGCTCAACACAGCTCCAACTGCAAGAGGATGGAGTCATATTTGCCCTGCCACCTACAGAAGCATTGGAGGGGTTGAAGAAAGTGGGTGGTGTGGATAAGAAGAAGAAAGAAGAGGCGAGTGGTCCAGGAGGGGAGGAGGAGGTGAAGGAGGGACCATCAGTGGAGATGAAAGCAGAGGACGTCAAAGAGTCAGTTGACGTCAAACCTGAGAAGGAGAACCTGCCGACCACTGATGTTGAGAACAGCACCAAACCTCCTGGGGAAAAATACACTCCTAAGGAGTTGCTAGCTTTGCTGAAGTATGTGGAAGCAGATATCGCCAACTACGAAGTGTATTTGAAAGAAGAAGTGGAAAAAAGGAAGAAGTACAAGATTGATGACCAGAGGAGGACTCATAACTATGACGAGTTTATCTGCACCTTCATATCAATGCTTGCACaagaagGTATGTTGGCGAGTCTGGTGGAGCAGAACATCTCTGTGCGTCGGCGACAAGGCGTAAGCATCGGTCGGCTTCACAAACAACGCAAACCTGATCGGCGGAAACGTTCACGGCCATACAAAGCCAAACGGCAATAGAAGATGATGatacaaataaatcaaatgacaGCAACCCCACAACCCATTTTGGAGAGACATTGTCCAAAAATCATTTCTGAATATCAACAGCAATGCTAAAATGCAGAATTGACAGTGTTAGCTAAGTTATCAATAGCTTAATCAGTTGTTTGCATCGTAAACGTACATGCACACCATCAGTTCCAAAGCAAATGAGCTATGCTCAATGTTTATAGATACTAAAACATTTTTCATGTTGCCATATGGAGTCATTACTTTGTACTGTATCAAAGCTAATCATAAAACCAACAATCATTGGAGCGCCATTTTGGGAAATATCCAGTCAAGGTTTTACCAAAGATAGTGCTTCAAGTTTAGTTGATAAGTGGTGGTGTATTTAGTTAACAAATGGATGAAATGTAAGAAATAAGCTGTTTTCAGATATCCTGGGATCAACCGTTCAGTCATTTTATTCGTAAGAAACTCAAAAATCATGAACAAAAGTTGGTTTGTGTGACAAATCTTCACTGTAATCGTTTGATTTTGGTTACCGTTTACTTGCTCTTCACGATTTTCTTGCCTTTTTTATCCTGGGGGTTTGTTTCTGATATGTTCCGTTTGCTTGTACATATGTATTTGTGTTGTCTGATGTCTGCACGGGTACTGTCAGATTTAGACATTAAAATTAATGTTTCGAATTACAA
>TCONS_00041193
gtgctccggtttcccccacagtccaaatacatgcgccataggtaaattgaattaccaaactgtccgtagtttatgtgtgtgggtggatgtttcccagttctgagttgcagctggaagagcatctgctatgtaaaacatatgctggataagtaggtggttcattccgctgtggcgacccctgataaataaagagactaagcagaaggaaaatgaatgaattattctaTAAATAAATTAAGCTAAAAATCACTAGTTTAAAtactaaaacagaaaaaatataaatgaatataaacaaataattatgtCCAATACATCTAGCATAAACTGTTCATGCTGAGATATaagaaaaatcacacacacaggTATACACCGAACaagctataaatatataaataaataaagttacgaAACCACAACCATTGTTAGTCCGTCATTACTATGTGTTGAACTTTACACCACAGCGCCACCGCGCGACCTTTCACTGCATTACACAAAGATGTAAATTCGACGGCTCAGCGTGATGACGTCAAGTCCAGGCGACGGAGCTGCTCTTTATTGTGTTTACTAGCTGTCCCGATCGCCTTAAGATGAATCAAATATGTGCCAGAAAATGATCGTCATGGTTCTTTCTAATATTATGGATCGGTCAATGGTTTAACCGGGGGTTTTGGTGACTCTGAATTCGCAAAAATGAACAAAGGTTGGCTGGAGTTAGAAAGTGACCCGGGTGAGTGTCAAAATCAACATTTCTGCATATGATAACGTTACCCGATTGTCTTTATTACATTTAGATCAATAATTATTCTATTGTTCAAATtcagttagggttagggttattaAAATGTCTTCTCGCTGTGTAACGTTTGTAGATTTTGGTTGTATTACTTATTGTGGCTTGAAAAGTAAACGCATTGAACTGATCAAATATGTATTCGTTAGTTGTTCTAATATCTTGTGCTCTTTCAGGGTTGTTCACACTCCTGGTGGAGGACTTTGGCGTGAAAGGAGTTCAGGTGGAGGAGATTTATGATCTTCAGAGCAAATGTCAAAGTCCTGTATATGGCTTCATCTTTCTTTTCAAATGGATCGAGGAGCGAAGATCTCGGCGTAAAGTCTCCACACTGGTGGATGAAACCTCTGTTATCGATGACGACATTGTTAATGACATGTTTTTCGCTCATCAGTTGATCCCGAACTCCTGTGCGACTCATGCTCTTCTCAGCGTGCTCCTGAACTGCAGCGGTGTGGAGCTGGGAATGACTCTGAGCCGCATGAAGGCTTTCACCAAGGGCTTCAATCCTGAGAGTAAAGGTTACGCCATTGGAAACGCCCCAGAGCTGGCGAAAGCCCACAACAGCCATGCCAGGCCGGAGCCGCGGCATCTTCCGGAGAAACAGAACGGCATTAGCGCTGTGCGGACGATGGAGGCGTTTCATTTTGTCAGTTACGTGCCAATCAAAGACAGACTGTTTGAGCTAGATGGGCTGAAGGCGTATCCCATTGACCACGgACCATGGGGTGAGGATGAAGAGTGGACAGATAAAGCCAGACGGGTCATAATGGAGCGAATAGGACTGGCCACTGCTGGAGAGCCCTACCATGACATCCGGTTTAATCTCATGGCGGTGGTTCCAGATCGCAGGATAAAATACGAGTCCAAGTTGGACATCCTGAAGCGGAACAGGCAGATCATACTTGAAGGGCTCCAGCAGATTAGAGAGAAAAAAGTTATTCGGATGACTCAGCAAGAATCAGGCCAGGATCGTAAGCAGCAAGACTCCTCTTCTTCAGAAGACACGCCCCCTGTTGTCAAAAAGGAGGAGGTGCAAGAAACACCAATACCTTCAGGTGCCGAGCAGGCCACACCCACAGAAACTCAAGAAGGTGCTGCCTCTTTACCAAGTCCAGCTGGTAAAGTCAGATCCATGGCTAAACCCGCTttgccagcagggggcgctccaCCACCAGCCCCTCTACCTGCTCCAAGCACCAACACCATTGTGCAGCGTCTACCAGCCTTCCTGGACAATCACAACTACGCCAAATCCCCCATGCAGGAAGAGGAGGATCTTGCTGCAGGTGTGGGACGCTCACGCCCCCCTCAGCCCCCTTATTCTGATGATGAGGATGActatgatgatgaagaggaggagtgCAGCACTGCTGGTGTCACAAACAGCAGGGTTCGAAGAAAGTTGGGTCTGCGTACCCGTACCATGAGCCGCACTGCAGTGGGCGGAGTCGCAGCAATGGAGGGTCAACTAGCACTCAGTGTTTTAGCAGAGAAGCTCAAGAAGGAGGTTCAGCGGAAAGACGCCTTGGCCACAACTGGATCCACACCTCTGAACGTACGTACCGAGGGTCGGACAGGTGGCATCAGCATCACCTCGGCTTGCCAGCCGTCGCCCACCCCTAGTAACGAAAGCACGGACACAGCCTCCGAGATTGGTAGTGCATTCAACTCCCCACTGCGGTCACCAGCTCGATCACAGGCGACTACACGTCCCTCCAGCCCAGTGGCTTCCCATGTAGGCCGCGTGCTGTTTGGGGAAGAGGAGGGGCTGCCTAGGTTAGATGCCCGACACAATCGGGCTGTCCGAGACTTGGGGGTGCTCGTGAGCTCAACACAGCTCCAACTGCAAGAGGATGGAGTCATATTTGCCCTGCCACCTACAGAAGCATTGGAGGGGTTGAAGAAAGTGGGTGGTGTGGATAAGAAGAAGAAAGAAGAGGCGAGTGGTCCAGGAGGGGAGGAGGAGGTGAAGGAGGGACCATCAGTGGAGATGAAAGCAGAGGACGTCAAAGAGTCAGTTGACGTCAAACCTGAGAAGGAGAACCTGCCGACCACTGATGTTGAGAACAGCACCAAACCTCCTGGGGAAAAATACACTCCTAAGGAGTTGCTAGCTTTGCTGAAGTATGTGGAAGCAGATATCGCCAACTACGAAGTGTATTTGAAAGAAGAAGTGGAAAAAAGGAAGAAGTACAAGATTGATGACCAGAGGAGGACTCATAACTATGACGAGTTTATCTGCACCTTCATATCAATGCTTGCACaagaagGTATGTTGGCGAGTCTGGTGGAGCAGAACATCTCTGTGCGTCGGCGACAAGGCGTAAGCATCGGTCGGCTTCACAAACAACGCAAACCTGATCGGCGGAAACGTTCACGGCCATACAAAGCCAAACGGCAATAG

Function

symbol description
bap1 Predicted to enable chromatin binding activity and thiol-dependent deubiquitinase. Acts upstream of or within Notch signaling pathway and cranial skeletal system development. Predicted to be located in nucleus. Predicted to be part of PR-DUB complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in basal cell carcinoma. Orthologous to human BAP1 (BRCA1 associated protein 1).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0035522 monoubiquitinated histone H2A deubiquitination biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0001558 regulation of cell growth biological_process
GO:0016579 protein deubiquitination biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0035517 PR-DUB complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko05111 Biofilm formation - Vibrio cholerae
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050208-492 Predicted to enable chromatin binding activity and thiol-dependent deubiquitinase. Acts upstream of or within Notch signaling pathway and cranial skeletal system development. Predicted to be located in nucleus. Predicted to be part of PR-DUB complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in basal cell carcinoma. Orthologous to human BAP1 (BRCA1 associated protein 1).

Ensembl:

ensembl_id ENSDARG00000063051

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041192 False 3122 mRNA 0.48 17 10591958 10604526
TCONS_00041193 True 3197 mRNA 0.48 16 10592641 10605045

Neighbor

gene id symbol gene type direction distance location
XLOC_020932 si:dkey-42i9.8 coding downstream 82 10586296 ~ 10591876 (-)
XLOC_020931 si:dkey-42i9.16 coding downstream 5767 10582222 ~ 10586191 (-)
XLOC_020930 si:dkey-42i9.7 coding downstream 11764 10575060 ~ 10580194 (-)
XLOC_020929 si:dkey-42i9.6 coding downstream 21209 10560686 ~ 10570749 (-)
XLOC_020928 si:dkey-42i9.4 coding downstream 50246 10540446 ~ 10541712 (-)
XLOC_020934 cyb561d2 coding upstream 34395 10639440 ~ 10641873 (-)
XLOC_020935 BX465868.1 coding upstream 52973 10658018 ~ 10660997 (-)
XLOC_020936 BX465868.3 coding upstream 62813 10667858 ~ 10667974 (-)
XLOC_020937 BX465868.2 coding upstream 68124 10673169 ~ 10675595 (-)
XLOC_020938 NA coding upstream 101730 10706775 ~ 10711531 (-)
XLOC_020919 NA non-coding downstream 369429 10216792 ~ 10222529 (-)
XLOC_020914 BX324213.1 non-coding downstream 512289 10076578 ~ 10079669 (-)
XLOC_020903 BX539307.3 non-coding downstream 765489 9824521 ~ 9826469 (-)
XLOC_020902 NA non-coding downstream 817915 9752170 ~ 9774043 (-)
XLOC_020901 BX664625.4 non-coding downstream 877627 9714214 ~ 9714331 (-)
XLOC_020940 BX908398.1 non-coding upstream 158888 10763933 ~ 10764047 (-)

Expression


Co-expression Network