G114320


Basic Information

Item Value
gene id G114320
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 12944196 ~ 12969839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU131140
ggtttattatggatccccattagttcctgataaggcagcagctagtcttcctggggtttattatggatccccattagtttctgccaaggcagcagctactcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcccggggtttactatggatccccattagttcctgccaagacagcagctactcttcctgtggtttattatggatccccattagttcctgccaatgcagcagctagtcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcctagggtttattatggatccacattagttcctgccaaggcagcagctactcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcctggggtttattatggatccccattagttcctgccaaggcagcagctactcttcctgaggtttattatggaaccccattagttcctgataaggcagcagctagtcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttt
>TU131141
ggtttattatggatccccattagttcctgataaggcagcagctagtcttcctggggtttattatggatccccattagtttctgccaaggcagcagctactcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcccggggtttactatggatccccattagttcctgccaagacagcagctactcttcctgtggtttattatggatccccattagttcctgccaatgcagcagctagtcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcctagggtttattatggatccacattagttcctgccaaggcagcagctactcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcctggggtttattatggatccccattagttcctgccaaggcagcagctagtcttcctggggtttattatggatccccattagttcctgccaaggcagcagctactcttcctgaggtttattatggaaccccattagttcctgccaaggcagcagctagtcttcctggggtttattatggatttccattagttcctgccaatgcagcagctagtcttcctggggtttattatggatccccagtagttc

Function

NR:

description
uncharacterized protein LOC100142646

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131140 False 644 lncRNA 0.48 3 12944196 12969839
TU131141 True 674 lncRNA 0.48 3 12944196 12946435

Neighbor

gene id symbol gene type direction distance location
LOC118937726 NA coding upstream 16494 12926821 ~ 12927702 (+)
LOC110525149 LOC106589684 coding upstream 27398 12913631 ~ 12916798 (+)
spag1b LOC106592835 coding upstream 167364 12716574 ~ 12776832 (+)
LOC110510520 rida coding upstream 264046 12674085 ~ 12680150 (+)
LOC110513835 nipal2 coding upstream 327999 12562337 ~ 12616197 (+)
LOC110507515 LOC106575761 coding downstream 77040 13046879 ~ 13061306 (+)
LOC118936508 ano10 coding downstream 223306 13193145 ~ 13241855 (+)
LOC110507612 NA coding downstream 355098 13324937 ~ 13330676 (+)
LOC110507631 LOC106574283 coding downstream 413349 13383188 ~ 13387921 (+)
LOC110517609 sbp1 coding downstream 604658 13574497 ~ 13582605 (+)
G114319 NA non-coding upstream 6160 12937573 ~ 12938036 (+)
G114286 LOC106591903 non-coding upstream 18923 12924472 ~ 12925273 (+)
G114297 NA non-coding upstream 72935 12867943 ~ 12871261 (+)
G114292 NA non-coding upstream 89464 12853063 ~ 12854732 (+)
G114279 NA non-coding upstream 105109 12838745 ~ 12839087 (+)
G114330 NA non-coding downstream 18586 12988425 ~ 12988629 (+)
G114335 NA non-coding downstream 37844 13007683 ~ 13007906 (+)
G114537 LOC106606051 non-coding downstream 120238 13090077 ~ 13090488 (+)
G114553 NA non-coding downstream 152085 13121924 ~ 13122191 (+)
G114554 NA non-coding downstream 153670 13123509 ~ 13123745 (+)
G114263 NA other upstream 181369 12762232 ~ 12762827 (+)
G114244 NA other upstream 222881 12720730 ~ 12721315 (+)
G114243 NA other upstream 223503 12720408 ~ 12720693 (+)
G113396 NA other upstream 1234419 11708603 ~ 11709777 (+)
G113313 LOC102781083 other upstream 1461455 11477976 ~ 11482741 (+)
LOC110520769 LOC106593286 other downstream 652138 13604304 ~ 13623972 (+)
LOC110520780 LOC106574729 other downstream 731771 13663839 ~ 13756558 (+)
LOC110535330 LOC106574784 other downstream 991422 13961020 ~ 13976561 (+)
G115190 NA other downstream 1172043 14141882 ~ 14144267 (+)
G115189 NA other downstream 1264675 14234514 ~ 14236854 (+)

Expression


Co-expression Network