G114643


Basic Information

Item Value
gene id G114643
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13246762 ~ 13248211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU131586
TCTGAGGTAAATAGTTGACAAGATAAAGTTATGGTGTAACATTGGGGATCGACACTGTACAGTGTAATGGATTCTTTTCTGTCAATTCCTTTAGCAACAAGTGATCGAAGTTGCATCTGACAGAACACAGACCCACTTGGGAGACAGGCGTGTCATCAATGCATCGCGAGCACAGAAAAGACTAGACTCGTTTGTAAGACGTCATTTCCCACAACATTTTATTTAGGATATCACCATAGCTATATGTAACTGTTCACAACAGGTATCAACTACAGAATAATACATTGAATAATTCTGCCATTTCATATTTTCATTTAGCCAGTACATGGTTTGGTCCAGTAACATTCAGTGGATGGTTCTTCCTCTCTCGATGTCCTTGGATGGATAATGTTAAACATATAACACATGCACATGTCATTCAGCTGTTTACATCTGGGTAAGACAACGGTCAGACTGGCCGACATGAATAAAGTCATGTTCTTTTCTTGGAGACACCCATTCCTAATAAGGCTATACTTACAGCTCTGCACCAAGAGGTTCACTCTGCCGACTCTAAATATAGAGCACCATATTTACATCTCTATTTACAGACATTTTGTTTCAAAAGAAAAAAAATACTCAAGATATCTTTCTCTGTTCGTTTTTAGTCCGAGGTGCCTTTCAATCTAAGGCTGTACAGGGTtgaaatataaaacaaaaatatgtTGATTTACAGATAGCTGCAACATGTAGCTTATTGCCAATGCCCTTAAAATATATCCCCACATCTCCCTACAACcccatttctttccttctttactAAGCCCAGTCCTTTAAAGCTTACAGACAGGAATCTCTCCTGAAAGGTGCATGTGCTCTACTGAACCACTAATCCTGAATGTAAAACCTTCACCCTGCAGTGTCCAGtaaggtgtgggtgtgtgtgacacACACTGCGATGTTAGTCCCCAACGAAAGACTCACGGGCCCAATTCAACACAGAATAATTTTTAAAACAGCAGATCGttcaaaaatataactttttaaaaCATATATACATACTCAACATATACcctttaaaaacaaacaaaccaaccaGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGACCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAA
>TU131583
GTCATTTCCCACAACATTTTATTTAGGATATCACCATAGCTATATGTAACTGTTCACAACAGGTATCAACTACAGAATAATACATTGAATAATTCTGCCATTTCATATTTTCATTTAGCCAGTACATGGTTTGGTCCAGTAACATTCAGTGGATGGTTCTTCCTCTCTCGATGTCCTTGGATGGATAATGTTAAACATATAACACATGCACATGTCATTCAGCTGTTTACATCTGGGTAAGACAACGGTCAGACTGGCCGACATGAATAAAGTCATGTTCTTTTCTTGGAGACACCCATTCCTAATAAGGCTATACTTACAGCTCTGCACCAAGAGGTTCACTCTGCCGACTCTAAATATAGAGCACCATATTTACATCTCTATTTACAGACATTTTGTTTCAAAAGAAAAAAAATACTCAAGATATCTTTCTCTGTTCGTTTTTAGTCCGAGGTGCCTTTCAATCTAAGGCTGTACAGGGTtgaaatataaaacaaaaatatgtTGATTTACAGATAGCTGCAACATGTAGCTTATTGCCAATGCCCTTAAAATATATCCCCACATCTCCCTACAACcccatttctttccttctttactAAGCCCAGTCCTTTAAAGCTTACAGACAGGAATCTCTCCTGAAAGGTGCATGTGCTCTACTGAACCACTAATCCTGAATGTAAAACCTTCACCCTGCAGTGTCCAGtaaggtgtgggtgtgtgtgacacACACTGCGATGTTAGTCCCCAACGAAAGACTCACGGGCCCAATTCAACACAGAATAATTTTTAAAACAGCAGATCGttcaaaaatataactttttaaaaCATATATACATACTCAACATATACcctttaaaaacaaacaaaccaaccaGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGACCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAAGACCAGCCTGCCAGGCCAGTCAGAAGACCAGCCTGCCAGGCCAGTCAGAAGACCAGCCTGCCAGGCCAGTCAGAAGACCATCCTGCCAGGCCAGTCAGAAGACCAGCCTGCCAGAGCAGTCAGAAGAC
>TU131584
GTCATTTCCCACAACATTTTATTTAGGATATCACCATAGCTATATGTAACTGTTCACAACAGGTATCAACTACAGAATAATACATTGAATAATTCTGCCATTTCATATTTTCATTTAGCCAGTACATGGTTTGGTCCAGTAACATTCAGTGGATGGTTCTTCCTCTCTCGATGTCCTTGGATGGATAATGTTAAACATATAACACATGCACATGTCATTCAGCTGTTTACATCTGGGTAAGACAACGGTCAGACTGGCCGACATGAATAAAGTCATGTTCTTTTCTTGGAGACACCCATTCCTAATAAGGCTATACTTACAGCTCTGCACCAAGAGGTTCACTCTGCCGACTCTAAATATAGAGCACCATATTTACATCTCTATTTACAGACATTTTGTTTCAAAAGAAAAAAAATACTCAAGATATCTTTCTCTGTTCGTTTTTAGTCCGAGGTGCCTTTCAATCTAAGGCTGTACAGGGTtgaaatataaaacaaaaatatgtTGATTTACAGATAGCTGCAACATGTAGCTTATTGCCAATGCCCTTAAAATATATCCCCACATCTCCCTACAACcccatttctttccttctttactAAGCCCAGTCCTTTAAAGCTTACAGACAGGAATCTCTCCTGAAAGGTGCATGTGCTCTACTGAACCACTAATCCTGAATGTAAAACCTTCACCCTGCAGTGTCCAGtaaggtgtgggtgtgtgtgacacACACTGCGATGTTAGTCCCCAACGAAAGACTCACGGGCCCAATTCAACACAGAATAATTTTTAAAACAGCAGATCGttcaaaaatataactttttaaaaCATATATACATACTCAACATATACcctttaaaaacaaacaaaccaaccaGCCTGC
>TU131585
GTCATTTCCCACAACATTTTATTTAGGATATCACCATAGCTATATGTAACTGTTCACAACAGGTATCAACTACAGAATAATACATTGAATAATTCTGCCATTTCATATTTTCATTTAGCCAGTACATGGTTTGGTCCAGTAACATTCAGTGGATGGTTCTTCCTCTCTCGATGTCCTTGGATGGATAATGTTAAACATATAACACATGCACATGTCATTCAGCTGTTTACATCTGGGTAAGACAACGGTCAGACTGGCCGACATGAATAAAGTCATGTTCTTTTCTTGGAGACACCCATTCCTAATAAGGCTATACTTACAGCTCTGCACCAAGAGGTTCACTCTGCCGACTCTAAATATAGAGCACCATATTTACATCTCTATTTACAGACATTTTGTTTCAAAAGAAAAAAAATACTCAAGATATCTTTCTCTGTTCGTTTTTAGTCCGAGGTGCCTTTCAATCTAAGGCTGTACAGGGTtgaaatataaaacaaaaatatgtTGATTTACAGATAGCTGCAACATGTAGCTTATTGCCAATGCCCTTAAAATATATCCCCACATCTCCCTACAACcccatttctttccttctttactAAGCCCAGTCCTTTAAAGCTTACAGACAGGAATCTCTCCTGAAAGGTGCATGTGCTCTACTGAACCACTAATCCTGAATGTAAAACCTTCACCCTGCAGTGTCCAGtaaggtgtgggtgtgtgtgacacACACTGCGATGTTAGTCCCCAACGAAAGACTCACGGGCCCAATTCAACACAGAATAATTTTTAAAACAGCAGATCGttcaaaaatataactttttaaaaCATATATACATACTCAACATATACcctttaaaaacaaacaaaccaaccaGCCTGCCAGGCCAGTCAGAAGATCAGCCTGCCAGACCAGTCAGAAGATCAGCCTGCCAGGCCAGTCAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131586 False 1147 lncRNA 0.40 1 13246762 13247908
TU131583 False 1250 lncRNA 0.45 1 13246962 13248211
TU131584 False 883 lncRNA 0.38 1 13246962 13247844
TU131585 True 947 lncRNA 0.51 1 13246962 13247908

Neighbor

gene id symbol gene type direction distance location
LOC118936508 ano10 coding upstream 4907 13193145 ~ 13241855 (+)
LOC110507515 LOC106575761 coding upstream 185456 13046879 ~ 13061306 (+)
LOC118937726 NA coding upstream 319060 12926821 ~ 12927702 (+)
LOC110525149 LOC106589684 coding upstream 329964 12913631 ~ 12916798 (+)
spag1b LOC106592835 coding upstream 469930 12716574 ~ 12776832 (+)
LOC110507612 NA coding downstream 76726 13324937 ~ 13330676 (+)
LOC110507631 LOC106574283 coding downstream 134977 13383188 ~ 13387921 (+)
LOC110517609 sbp1 coding downstream 326286 13574497 ~ 13582605 (+)
LOC110507693 LOC106574548 coding downstream 335913 13584124 ~ 13604148 (+)
LOC110520769 LOC106593286 coding downstream 356093 13604304 ~ 13623972 (+)
G114620 NA non-coding upstream 56456 13190075 ~ 13190306 (+)
G114617 NA non-coding upstream 59989 13186078 ~ 13186773 (+)
G114611 NA non-coding upstream 70677 13175844 ~ 13176085 (+)
G114609 NA non-coding upstream 72257 13174245 ~ 13174505 (+)
G114603 NA non-coding upstream 80170 13166364 ~ 13166592 (+)
G114648 NA non-coding downstream 11147 13259358 ~ 13259645 (+)
G114652 NA non-coding downstream 17117 13265328 ~ 13265607 (+)
G114653 NA non-coding downstream 17947 13266158 ~ 13266370 (+)
G114655 NA non-coding downstream 19133 13267344 ~ 13267562 (+)
G114656 NA non-coding downstream 54836 13303047 ~ 13304633 (+)
G114323 NA other upstream 281832 12949360 ~ 12964930 (+)
G114263 NA other upstream 483935 12762232 ~ 12762827 (+)
G114244 NA other upstream 525447 12720730 ~ 12721315 (+)
G114243 NA other upstream 526069 12720408 ~ 12720693 (+)
G113396 NA other upstream 1536985 11708603 ~ 11709777 (+)
LOC110520780 LOC106574729 other downstream 453399 13663839 ~ 13756558 (+)
LOC110535330 LOC106574784 other downstream 713050 13961020 ~ 13976561 (+)
G115190 NA other downstream 893671 14141882 ~ 14144267 (+)
G115189 NA other downstream 986303 14234514 ~ 14236854 (+)

Expression


Co-expression Network